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Job request: 3901

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
second-line-diabetes-covid-research
ID:
5epsdhlmnx56qqly
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher John Tazare requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_cohort
    Status:
    Status: Succeeded
    Job identifier:
    xipedtfzkkfgbvhh
  • Action:
    descriptive_analysis
    Status:
    Status: Failed
    Job identifier:
    udhighxdl7gsrcen
    Error:
    nonzero_exit: Job exited with an error code

Pipeline

Show project.yaml 
version: "3.0"

expectations:
  population_size: 100000

actions:
  generate_cohort:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.csv

  descriptive_analysis:
    run: stata-mp:latest analysis/000_cr_descriptive_cohort.do 
    needs: [generate_cohort]
    outputs:
      moderately_sensitive:
        table_1: output/tabfig/table_1.csv
        desc_stats: output/tabfig/descriptive_stats.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 02:13:09

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
second-line-diabetes-covid-research
Requested by
John Tazare
Branch
master
Force run dependencies
Yes
Git commit hash
71a4b11
Requested actions
  • run_all

Code comparison

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