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Job request: 847

Organisation:
Bennett Institute
Workspace:
aftershocks-health-inequalities
ID:
extytmv66smbicob
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Richard Croker requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 1000

actions:

  generate_cohorts:
    run: cohortextractor:latest generate_cohort --study-definition study_definition --index-date-range "2020-01-01 to 2020-12-01 by month" --output-dir=output/measures
    outputs:
      highly_sensitive:
        cohort: output/measures/input_*.csv


  generate_measures:
    run: cohortextractor:latest generate_measures --study-definition study_definition --skip-existing --output-dir=output/measures
    needs: [generate_cohorts]
    outputs:
      moderately_sensitive:
        measure_csv: output/measures/measure_*.csv

  generate_notebook:
    run: jupyter:latest jupyter nbconvert /workspace/notebooks/event_incidence_charts.ipynb --execute --to html --output-dir=/workspace/output --ExecutePreprocessor.timeout=86400
    needs: [generate_measures]
    outputs:
      moderately_sensitive:
        notebook: output/event_incidence_charts.html 
        measures_dict: analysis/measures_dict.txt

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:28:48

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Succeeded
Backend
TPP
Workspace
aftershocks-health-inequalities
Requested by
Richard Croker
Branch
combined_tests
Force run dependencies
No
Git commit hash
89fb93b
Requested actions
  • generate_measures

Code comparison

Compare the code used in this Job Request