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Job request: 853

Organisation:
Bennett Institute
Workspace:
aftershocks-health-inequalities
ID:
e6z6hjkgllbinjiy
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Richard Croker requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 1000

actions:

  generate_cohorts:
    run: cohortextractor:latest generate_cohort --study-definition study_definition --index-date-range "2020-01-01 to 2020-12-01 by month" --output-dir=output/measures
    outputs:
      highly_sensitive:
        cohort: output/measures/input_*.csv


  generate_measures:
    run: cohortextractor:latest generate_measures --study-definition study_definition --skip-existing --output-dir=output/measures
    needs: [generate_cohorts]
    outputs:
      moderately_sensitive:
        measures_dict: analysis/measures_dict.txt
        measure_csv: output/measures/measure_*.csv

  generate_notebook:
    run: jupyter:latest jupyter nbconvert /workspace/notebooks/event_incidence_charts.ipynb --execute --to html --output-dir=/workspace/output --ExecutePreprocessor.timeout=86400
    needs: [generate_measures]
    outputs:
      moderately_sensitive:
        notebook: output/event_incidence_charts.html

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:02:20

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Succeeded
Backend
TPP
Workspace
aftershocks-health-inequalities
Requested by
Richard Croker
Branch
combined_tests
Force run dependencies
No
Git commit hash
74b410b
Requested actions
  • generate_notebook

Code comparison

Compare the code used in this job request