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Job request: 853

Organisation:
Bennett Institute
Workspace:
aftershocks-health-inequalities
ID:
e6z6hjkgllbinjiy
View repo View project.yaml

This page shows the technical details of what happened when authorised researcher Richard Croker requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the indicated Requested Actions with the Pipeline section below, you can infer what security level various outputs were written to. Outputs marked as highly_sensitive can never be viewed directly by a researcher; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 1000

actions:

  generate_cohorts:
    run: cohortextractor:latest generate_cohort --study-definition study_definition --index-date-range "2020-01-01 to 2020-12-01 by month" --output-dir=output/measures
    outputs:
      highly_sensitive:
        cohort: output/measures/input_*.csv


  generate_measures:
    run: cohortextractor:latest generate_measures --study-definition study_definition --skip-existing --output-dir=output/measures
    needs: [generate_cohorts]
    outputs:
      moderately_sensitive:
        measures_dict: analysis/measures_dict.txt
        measure_csv: output/measures/measure_*.csv

  generate_notebook:
    run: jupyter:latest jupyter nbconvert /workspace/notebooks/event_incidence_charts.ipynb --execute --to html --output-dir=/workspace/output --ExecutePreprocessor.timeout=86400
    needs: [generate_measures]
    outputs:
      moderately_sensitive:
        notebook: output/event_incidence_charts.html

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:02:20

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Succeeded
Backend
TPP
Workspace
aftershocks-health-inequalities
Requested by
Richard Croker
Branch
combined_tests
Force run dependencies
No
Git commit hash
74b410b
Requested actions
  • generate_notebook

Code comparison

Compare the code used in this Job Request