Job request: 2817
- Organisation:
- Bennett Institute
- Workspace:
- pulse_oximetry_sro
- ID:
- jk4ryeqf3kbagy35
This page shows the technical details of what happened when authorised researcher Jon Massey requested one or more actions to be run against real patient data in the project, within a secure environment.
By cross-referencing the indicated Requested Actions with the
Pipeline section below, you can infer what
security level
various outputs were written to. Outputs marked as
highly_sensitive
can never be viewed directly by a researcher; they can only
request that code runs against them. Outputs marked as
moderately_sensitive
can be viewed by an approved researcher by logging into a highly
secure environment. Only outputs marked as
moderately_sensitive
can be requested for release to the public, via a controlled
output review service.
Jobs
-
- Job identifier:
-
hhctvhijtmggltmq
-
- Job identifier:
-
cg4zzbieexindeqr
-
- Job identifier:
-
cmyg2qe7yazgsc2p
Pipeline
Show project.yaml
version: '3.0'
expectations:
population_size: 10000
actions:
generate_cohort:
run: cohortextractor:latest generate_cohort --study-definition study_definition_cohort
outputs:
highly_sensitive:
cohort: output/input_cohort.csv
count_by_strata:
run: python:latest python analysis/all_time_counts.py
needs: [generate_cohort]
outputs:
moderately_sensitive:
table: output/counts_table.csv
table_historic: output/counts_table_hist.csv
practice_distribution: output/practice_distribution.csv
practice_distribution_historical: output/practice_distribution_historical.csv
per_week: output/code_use_per_week_pulse_oximetry.csv
historic_per_week: output/code_use_per_week_historic_pulse_oximetry.csv
code_table: output/all_pulse_oximetry_codes.csv
historic_code_table: output/all_historic_pulse_oximetry_codes.csv
practice_summ: output/practice_summ.txt
generate_plots:
run: python:latest python analysis/local_graphs.py
needs: [count_by_strata]
outputs:
moderately_sensitive:
plot_per week: output/code_use_per_week.svg
historical_plot_per week: output/historical_code_use_per_week.svg
plot_distribution: output/practice_distribution.svg
plot_historical_distribution: output/practice_historical_distribution.svg
Timeline
-
Created:
-
Started:
-
Finished:
-
Runtime: 00:34:42
These timestamps are generated and stored using the UTC timezone on the TPP backend.
Job information
- Status
-
Failed
- Backend
- TPP
- Workspace
- pulse_oximetry_sro
- Requested by
- Jon Massey
- Branch
- master
- Force run dependencies
- No
- Git commit hash
- 8e87a33
- Requested actions
-
-
run_all
-
Code comparison
Compare the code used in this Job Request
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