Skip to content

Job request: 3947

Organisation:
Bennett Institute
Workspace:
pulse_oximetry_sro
ID:
cgpvd2lmzm244nik
View repo View project.yaml

This page shows the technical details of what happened when authorised researcher Colm Andrews requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the indicated Requested Actions with the Pipeline section below, you can infer what security level various outputs were written to. Outputs marked as highly_sensitive can never be viewed directly by a researcher; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 10000

actions:

  generate_cohort:
    run: cohortextractor:latest generate_cohort --study-definition study_definition_snomedcheck --output-format feather
    outputs:
      highly_sensitive:
        cohort: output/input_snomedcheck.feather

  count_by_strata:
    run: python:latest python analysis/COPD005_count.py
    needs: [generate_cohort]
    outputs:
      moderately_sensitive:
        historic_code_table: output/all_historic_pulse_oximetry_codes.csv
        historic_code_table_cv3: output/all_historic_pulse_oximetry_codes_ctv3.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:35:48

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Succeeded
Backend
TPP
Workspace
pulse_oximetry_sro
Requested by
Colm Andrews
Branch
master
Force run dependencies
Yes
Git commit hash
669c917
Requested actions
  • run_all

Code comparison

Compare the code used in this Job Request