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Job request: 363

Organisation:
Bennett Institute
Workspace:
service_restoration_observatory_dummy
ID:
jcpqvaprseyzm77d
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Helen Curtis requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_cohorts
    Status:
    Status: Failed
    Job identifier:
    kneupyfvtrng3j45
    Error:
    ProjectValidationError: Action 'run_all' lists unknown action 'run_model' in its `needs` config

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 1000

actions:

  generate_cohorts:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.csv

  generate_measures:
    run: cohortextractor:latest generate_measures --study-definition study_definition --skip-existing --output-dir=output/measures
    needs: [generate_cohorts]
    outputs:
      moderately_sensitive:
        measure_csv: output/measures/measure_*.csv

  run_all:
    needs:
      - run_model
    # In order to be valid this action needs to define a run commmand and some
    # output. We don't really care what these are but the below does the trick.
    # In a future release of the platform, this special action won't need to be
    # defined at all.
    run: cohortextractor:latest --version
    outputs:
      moderately_sensitive:
        whatever: project.yaml

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime:

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
service_restoration_observatory_dummy
Requested by
Helen Curtis
Branch
extended-analysis
Force run dependencies
No
Git commit hash
04d6156
Requested actions
  • generate_cohorts

Code comparison

Compare the code used in this job request