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Job request: 367

Organisation:
Bennett Institute
Workspace:
service_restoration_observatory_full
ID:
hdwxaivmcbax3pui
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Helen Curtis requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    run_all
    Status:
    Status: Failed
    Job identifier:
    xmdjz5h5cgeppihs
    Error:
    JobRequestError: generate_measures failed on a previous run and must be re-run

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 1000

actions:

  generate_cohorts:
    run: cohortextractor:latest generate_cohort --study-definition study_definition --index-date-range "2020-01-01 to 2020-11-01 by month" --output-dir=output/measures
    outputs:
      highly_sensitive:
        cohort: output/measures/input_*.csv

  generate_measures:
    run: cohortextractor:latest generate_measures --study-definition study_definition --skip-existing --output-dir=output/measures
    needs: [generate_cohorts]
    outputs:
      moderately_sensitive:
        measure_csv: output/measures/measure_*.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime:

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
service_restoration_observatory_full
Requested by
Helen Curtis
Branch
extended-analysis
Force run dependencies
No
Git commit hash
a71b1fe
Requested actions
  • run_all

Code comparison

Compare the code used in this job request