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Job request: 2441

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
sgtf-617-research
ID:
fngqelkhly742r5d

This page shows the technical details of what happened when authorised researcher Daniel Grint requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the indicated Requested Actions with the Pipeline section below, you can infer what security level various outputs were written to. Outputs marked as highly_sensitive can never be viewed directly by a researcher; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

  • Action:
    generate_cohort
    Status:
    Status: Succeeded
    Job identifier:
    sqx4h6sjw3pdctyp
  • Action:
    crMAIN
    Status:
    Status: Succeeded
    Job identifier:
    uhhw66ujelr6lfg3
  • Action:
    anTAB1
    Status:
    Status: Succeeded
    Job identifier:
    62o2guef45wy4af2

Pipeline

Show project.yaml
version: '3.0'

expectations:
  population_size: 50000

actions:

  generate_cohort:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.csv

  crMAIN:
    run: stata-mp:latest analysis/cr_analysis_dataset.do
    needs: [generate_cohort]
    outputs:
      moderately_sensitive:
        log: logs/cr_analysis_dataset.log
      highly_sensitive:
        data: output/cr_analysis_dataset.dta

  anTAB1:
    run: stata-mp:latest analysis/an_table1.do
    needs: [crMAIN]
    outputs:
      moderately_sensitive:
        log: logs/an_table1.log
        table1text: output/table1.txt
        table1xlsx: output/table1.xlsx
        figure1: output/ae_hist.svg
        figure2: output/ae_kden.svg

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 01:43:08

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Succeeded
Backend
TPP
Workspace
sgtf-617-research
Requested by
Daniel Grint
Branch
master
Force run dependencies
No
Git commit hash
4190158
Requested actions
  • generate_cohort
  • crMAIN
  • anTAB1