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Job request: 4812

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
sgtf-omi
ID:
z6zksbwal2uaeofn

This page shows the technical details of what happened when the authorised researcher Daniel Grint requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_cohort
    Status:
    Status: Succeeded
    Job identifier:
    kqov4jq3yb57iygr
  • Action:
    crMAIN
    Status:
    Status: Succeeded
    Job identifier:
    33su3evnlfq4csip
  • Action:
    anSUMM
    Status:
    Status: Succeeded
    Job identifier:
    mwyxjbfw2cttq3fa

Pipeline

Show project.yaml
version: '3.0'

expectations:
  population_size: 10000

actions:

  generate_cohort:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.csv

  crMAIN:
    run: stata-mp:latest analysis/cr_main.do
    needs: [generate_cohort]
    outputs:
      moderately_sensitive:
        log: logs/cr_main.log
      highly_sensitive:
        data: output/main.dta
        
  anSUMM:
    run: stata-mp:latest analysis/an_summary.do
    needs: [crMAIN]
    outputs:
      moderately_sensitive:
        log: logs/an_summary.log
        figure1: output/sgtf_perc.svg
        figure2: output/sgtf_perc.pdf

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 02:17:43

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Succeeded
Backend
TPP
Workspace
sgtf-omi
Requested by
Daniel Grint
Branch
main
Force run dependencies
No
Git commit hash
f919625
Requested actions
  • generate_cohort
  • crMAIN
  • anSUMM

Code comparison

Compare the code used in this job request