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Job request: 1180

Organisation:
Bennett Institute
Workspace:
surgery-outcomes-testing
ID:
43jap42t7g2l23au
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Helen Curtis requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 5000

actions:

  generate_study_population:
    run: cohortextractor:latest generate_cohort --study-definition study_definition --index-date-range "2020-04-01 to 2020-04-01 by month"
    outputs:
      highly_sensitive:
        cohort: output/input_2020*.csv


  generate_study_population_2019:
    run: cohortextractor:latest generate_cohort --study-definition study_definition --index-date-range "2019-04-01 to 2019-04-01 by month"
    outputs:
      highly_sensitive:
        cohort: output/input_2019*.csv


  generate_notebook:
    run: jupyter:latest jupyter nbconvert /workspace/notebooks/analysis.ipynb --execute --to html --output-dir=/workspace/output --ExecutePreprocessor.timeout=86400
    needs: [generate_study_population, generate_study_population_2019]
    outputs:
      moderately_sensitive:
        notebook: output/analysis.html
        tables: output/summary*

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:23:30

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Succeeded
Backend
TPP
Workspace
surgery-outcomes-testing
Requested by
Helen Curtis
Branch
testing
Force run dependencies
No
Git commit hash
6308c51
Requested actions
  • generate_study_population

Code comparison

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