Job request: 14691
- Organisation:
- University of Surrey
- Workspace:
- mh_emergencies
- ID:
- 7o26bylpkcxskvww
This page shows the technical details of what happened when authorised researcher AgzLeman requested one or more actions to be run against real patient data in the project, within a secure environment.
By cross-referencing the indicated Requested Actions with the
Pipeline section below, you can infer what
security level
various outputs were written to. Outputs marked as
highly_sensitive
can never be viewed directly by a researcher; they can only
request that code runs against them. Outputs marked as
moderately_sensitive
can be viewed by an approved researcher by logging into a highly
secure environment. Only outputs marked as
moderately_sensitive
can be requested for release to the public, via a controlled
output review service.
Jobs
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- Job identifier:
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dksc4fe4hiitdcmz
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- Job identifier:
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6mamut2f73dnkxiv
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- Job identifier:
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5womkzgx45vqo44w
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- Job identifier:
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3hbspbyybp3hhu6o
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- Job identifier:
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ua36623eybs7jwnp
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- Job identifier:
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ewybufcfzcfkmc2x
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- Job identifier:
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kehbp64el3rfxsvz
Pipeline
Show project.yaml
version: '3.0'
expectations:
population_size: 1000
actions:
generate_ethnicity:
run: cohortextractor:latest generate_cohort --study-definition study_definition_ethnicity --output-format=feather
outputs:
highly_sensitive:
cohort: output/input_ethnicity.feather
generate_study_population:
run: cohortextractor:latest generate_cohort --study-definition study_definition
outputs:
highly_sensitive:
cohort: output/input.csv
generate_rates_1:
run: cohortextractor:latest generate_cohort --study-definition study_definition_rates --index-date-range "2015-01-01 to 2018-12-01 by month" --skip-existing --output-dir=output --output-format=feather
outputs:
highly_sensitive:
cohort: output/measures/inpu*.feather
generate_rates_2:
run: cohortextractor:latest generate_cohort --study-definition study_definition_rates --index-date-range "2019-01-01 to 2022-12-01 by month" --skip-existing --output-dir=output --output-format=feather
outputs:
highly_sensitive:
cohort: output/measures/inp*.feather
join_ethnicity:
run: python:latest python analysis/join_ethnicity.py
needs:
[
generate_rates_1,
generate_rates_2,
generate_ethnicity,
]
outputs:
highly_sensitive:
cohort: output/measures/in*.feather
generate_measures:
run: cohortextractor:latest generate_measures --study-definition study_definition_rates --skip-existing --output-dir=output/measures
needs:
[
generate_rates_1,
generate_rates_2,
join_ethnicity,
]
outputs:
moderately_sensitive:
measure_csv1: output/measures/measure_self_harmAE*_rate.csv
measure_csv2: output/measures/measure_self_harmAEbyRegion*_rate.csv
measure_csv3: output/measures/measure_self_harmAEbyIMD*_rate.csv
measure_csv4: output/measures/measure_self_harmAEbyEthnicity*_rate.csv
measure_csv5: output/measures/measure_self_harmAEbyAge*_rate.csv
describe_trends:
run: r:latest analysis/Descriptive_trends.R
needs:
[
generate_measures,
]
outputs:
moderately_sensitive:
fig1: output/self_harmAE.png
fig2: output/self_harmAEbyReg.png
fig3: output/self_harmAEbyIMD.png
fig4: output/self_harmAEbyEth.png
fig5: output/self_harmAEbyAge.png
csv1: output/self_harmAE_rounded.csv
csv2: output/self_harmAEbyReg_rounded.csv
csv3: output/self_harmAEbyIMD_rounded.csv
csv4: output/self_harmAEbyEth_rounded.csv
csv5: output/self_harmAEbyAge_rounded.csv
Timeline
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Created:
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Started:
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Finished:
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Runtime: 29:10:36
These timestamps are generated and stored using the UTC timezone on the TPP backend.
Job information
- Status
-
Succeeded
- Backend
- TPP
- Workspace
- mh_emergencies
- Requested by
- AgzLeman
- Branch
- main
- Force run dependencies
- Yes
- Git commit hash
- cd281ea
- Requested actions
-
-
run_all
-
Code comparison
Compare the code used in this Job Request
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