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Job request: 27455

Organisation:
University of Bristol
Workspace:
shingrix-dementia
ID:
slqg6taayntqhqm6
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Will Hulme requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_dataset_shingrix_main
    Status:
    Pending
    Job identifier:
    wpebb6hvnak6e6nu
    Status message:
    waiting_on_db_workers: Waiting on available database workers
  • Action:
    coverage_shingrix
    Status:
    Pending
    Job identifier:
    knh7dkumv5pkg5qi
    Status message:
    waiting_on_dependencies: Waiting on dependencies

Pipeline

Show project.yaml 
version: '5.0'

actions:

  ## # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # 
  ## DO NOT EDIT project.yaml DIRECTLY 
  ## This file is created by create_project_actions.R 
  ## Edit and run create_project_actions.R to update the project.yaml 
  ## # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # 
  
  ## Generate dataset 

  generate_dataset_shingrix_main:
    run: ehrql:v1 generate-dataset analysis/dataset_definition.py --output output/shingrix/dataset_shingrix_main.arrow
      --dummy-data-file analysis/dummy_data/dummy_dataset_shingrix.arrow -- --threshold_date 2023-09-01 
      --min_dob 1948-09-01 --max_dob 1968-09-01 --vaccine_name shingrix
    outputs:
      highly_sensitive:
        data: output/shingrix/dataset_shingrix_main.arrow

  ## Check Shingrix coverage (no exclusions) 

  coverage_shingrix:
    run: r:v2 analysis/shingrix/0_shingrix_coverage.R
    needs:
    - generate_dataset_shingrix_main
    outputs:
      moderately_sensitive:
        csv: output/shingrix/coverage/*.csv
        png: output/shingrix/coverage/*.png

Job statistics

Status Count Percentage
Pending 2 100%
Running 0 0%
Succeeded 0 0%
Failed 0 0%

0 / 2 (0%) complete

Timeline

  • Created:

  • Runtime:

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Pending
Backend
TPP
Workspace
shingrix-dementia
Requested by
Will Hulme
Branch
main
Force run dependencies
No
Git commit hash
1b4dad3
Requested actions
  • generate_dataset_shingrix_main
  • coverage_shingrix

Code comparison

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