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Job request: 26618

Organisation:
Bennett Institute
Workspace:
bhf_os_cvd
ID:
otglqdkzmadxzlhs
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Molly McPaul requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    analysis
    Status:
    Failed
    Job identifier:
    qs4ay3xc24c5ioyo
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    generate_measures
    Status:
    Failed
    Job identifier:
    bcb5qvrkgscxmu55
    Status message:
    cancelled_by_user: Cancelled by user

Pipeline

Show project.yaml 
version: '5.0'

actions:
  generate_measures:
    run: ehrql:v1 generate-measures analysis/dataset_definition.py --output output/measures_attendances.csv.gz
    outputs:
      highly_sensitive:
        measures: output/measures_attendances.csv.gz

  analysis:
    run: python:v2 analysis/preprocess.py
    needs: [generate_measures]
    outputs:
      moderately_sensitive:
        analysis: output/preprocess_results.csv
        #analysis_summary: output/preprocess_summary.csv.gz

Job statistics

Status Count Percentage
Pending 0 0%
Running 0 0%
Succeeded 0 0%
Failed 2 100%

2 / 2 (100%) complete

Timeline

  • Created:

  • Finished:

  • Runtime:

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
bhf_os_cvd
Requested by
Molly McPaul
Branch
main
Force run dependencies
Yes
Git commit hash
fbd61fd
Requested actions
  • analysis

Code comparison

Compare the code used in this job request