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Job request: 27447

Organisation:
Bennett Institute
Workspace:
bhf_os_cvd
ID:
ijw4jmyv6mdeavgn
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Molly McPaul requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    analysis
    Status:
    Pending
    Job identifier:
    sezz5fbyw3nfjckc
    Status message:
    waiting_on_dependencies: Waiting on dependencies
  • Action:
    generate_measures
    Status:
    Pending
    Job identifier:
    oca56h6ymvzoodl2
    Status message:
    waiting_on_db_workers: Waiting on available database workers
  • Action:
    age_standardize
    Status:
    Pending
    Job identifier:
    kfag2vpgpurwrmwi
    Status message:
    waiting_on_dependencies: Waiting on dependencies

Pipeline

Show project.yaml 
version: '5.0'

actions:
  generate_measures:
    run: ehrql:v1 generate-measures analysis/dataset_definition.py --output output/measures_attendances.csv.gz
    outputs:
      highly_sensitive:
        measures: output/measures_attendances.csv.gz

  analysis:
    run: python:v2 analysis/preprocess.py
    needs: [generate_measures]
    outputs:
      moderately_sensitive:
        analysis: output/preprocess_results.csv
        #analysis_summary: output/preprocess_summary.csv.gz

  age_standardize:
    run: python:v2 analysis/age_standardize.py
    needs: [analysis]
    outputs:
      moderately_sensitive:
        age_standardized_sex: output/age_standardized_sex.csv
        age_standardized_imd_quintile: output/age_standardized_imd_quintile.csv
        age_standardized_ethnicity_group: output/age_standardized_ethnicity_group.csv

Job statistics

Status Count Percentage
Pending 3 100%
Running 0 0%
Succeeded 0 0%
Failed 0 0%

0 / 3 (0%) complete

Timeline

  • Created:

  • Runtime:

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Pending
Backend
TPP
Workspace
bhf_os_cvd
Requested by
Molly McPaul
Branch
main
Force run dependencies
Yes
Git commit hash
9cd4027
Requested actions
  • generate_measures
  • analysis
  • age_standardize
  • run_all

Code comparison

Compare the code used in this job request