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Job request: 15068

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
healthcare_utilisation_openprompt
ID:
7vxu4zcyufsl7hq2
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Liang-Yu Lin requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 1000

actions:

  generate_dataset_exp_lc:
    run: 
      databuilder:v0 generate-dataset
        analysis/dataset_definition_exp_lc.py
        --output output/dataset_exp_lc.csv
    outputs:
      highly_sensitive:
        cohort: output/dataset_exp_lc.csv

  generate_dataset_lc_gp:
    run: 
      databuilder:v0 generate-dataset
        analysis/dataset_definition_lc_gp_list.py
        --output output/dataset_lc_gp_list.csv
    outputs:
      highly_sensitive:
        cohort: output/dataset_lc_gp_list.csv

  generate_dataset_comparator_large:
    run: 
      databuilder:v0 generate-dataset
        analysis/dataset_definition_comparator_large.py
        --output output/dataset_comparator_large.csv
    outputs:
      highly_sensitive:
        cohort: output/dataset_comparator_large.csv

  generate_dataset_comparator_filtered_gp:
    run: r:latest analysis/dm01_filter_gp_without_lc_dx.R      
    needs: [generate_dataset_comparator_large, generate_dataset_lc_gp]
    outputs:
      highly_sensitive:
        cohort: output/dataset_comparator_filtered_gp.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:33:37

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Succeeded
Backend
TPP
Workspace
healthcare_utilisation_openprompt
Requested by
Liang-Yu Lin
Branch
main
Force run dependencies
No
Git commit hash
8e4d78e
Requested actions
  • generate_dataset_exp_lc
  • generate_dataset_lc_gp
  • generate_dataset_comparator_large

Code comparison

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