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Job request: 24383

Organisation:
King's College London
Workspace:
zoster_incidence_imids
ID:
lm2q4i5lbo7di4ct
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Zijing Yang requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

  • Action:
    generate_dataset
    Status:
    Status: Succeeded
    Job identifier:
    hr3z5jwoqsf7aplq
  • Action:
    data_cleaning
    Status:
    Status: Succeeded
    Job identifier:
    dwkyb5bn3bjgpkrh
  • Action:
    Baseline_table
    Status:
    Status: Succeeded
    Job identifier:
    ewz6coxcpqqp6hlf
  • Action:
    Incidence_table
    Status:
    Status: Succeeded
    Job identifier:
    hohai4s63gkpznvb
  • Action:
    KM_plot
    Status:
    Status: Succeeded
    Job identifier:
    s4l5m5prtf6m3atx

Pipeline

Show project.yaml 
version: '4.0'

actions:
  generate_dataset:
    run: ehrql:v1 generate-dataset analysis/dataset_definition.py --output output/dataset.arrow
    outputs:
      highly_sensitive:
        dataset: output/dataset.arrow

  data_cleaning:
    run: r:latest analysis/data_cleaning.R
    needs:
    - generate_dataset
    outputs:
      highly_sensitive:
        table1: output/dt.csv

  Baseline_table:
    run: r:latest analysis/baseline_table.R
    needs:
    - data_cleaning
    outputs:
      moderately_sensitive:
        table1: output/Baseline_table.csv

  Incidence_table:
    run: r:latest analysis/incidence_trend.R
    needs:
    - data_cleaning
    outputs:
      moderately_sensitive:
        csv:  output/*.csv

    
  KM_plot:
    run: r:latest analysis/km_survival.R
    needs:
    - data_cleaning
    outputs:
      moderately_sensitive:
        plot:  output/km_zoster_combined.png

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 12:57:15

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Succeeded
Backend
TPP
Workspace
zoster_incidence_imids
Requested by
Zijing Yang
Branch
main
Force run dependencies
No
Git commit hash
e2518b9
Requested actions
  • run_all

Code comparison

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