Job request: 24436
- Organisation:
- King's College London
- Workspace:
- zoster_incidence_imids
- ID:
- vo3vxxlry7csoi3n
This page shows the technical details of what happened when the authorised researcher Zijing Yang requested one or more actions to be run against real patient data in the project, within a secure environment.
By cross-referencing the list of jobs with the
pipeline section below, you can infer what
security level
various outputs were written to. Researchers can never directly
view outputs marked as
highly_sensitive
;
they can only request that code runs against them. Outputs
marked as
moderately_sensitive
can be viewed by an approved researcher by logging into a highly
secure environment. Only outputs marked as
moderately_sensitive
can be requested for release to the public, via a controlled
output review service.
Jobs
-
- Job identifier:
-
i5kq4rovt76ubwfw
Pipeline
Show project.yaml
version: '4.0'
actions:
generate_dataset:
run: ehrql:v1 generate-dataset analysis/dataset_definition.py --output output/dataset.arrow
outputs:
highly_sensitive:
dataset: output/dataset.arrow
data_cleaning:
run: r:latest analysis/data_cleaning.R
needs:
- generate_dataset
outputs:
highly_sensitive:
table1: output/dt.csv
Baseline_table:
run: r:latest analysis/baseline_table.R
needs:
- data_cleaning
outputs:
moderately_sensitive:
table1: output/Baseline_table.csv
Incidence_table:
run: r:latest analysis/Incidence_imids_diag_V2.R
needs:
- data_cleaning
outputs:
moderately_sensitive:
table1: output/zoster_by_month_and_imids.csv
Incidence_gender_table:
run: r:latest analysis/Incidence_imids_diag_gender.R
needs:
- data_cleaning
outputs:
moderately_sensitive:
table1: output/zoster_by_month_imids_gender.csv
KM_plot:
run: r:latest analysis/km_survival.R
needs:
- data_cleaning
outputs:
moderately_sensitive:
plot1: output/km_zoster_combined.png
KM_sub_plot:
run: r:latest analysis/KM_sub.R
needs:
- data_cleaning
outputs:
moderately_sensitive:
plot1: output/km_zoster_imid_age.png
plot_ad: output/km_zoster_AD_age.png
plot_ra: output/km_zoster_RA_age.png
plot_ibd: output/km_zoster_IBD_age.png
plot_ps: output/km_zoster_PS_age.png
plot_hs: output/km_zoster_HS_age.png
plot_as: output/km_zoster_AS_age.png
plot_psa: output/km_zoster_PsA_age.png
Incidence_plot:
run: r:latest analysis/incidence_plot.R
needs:
- data_cleaning
- Incidence_table
- Incidence_gender_table
outputs:
moderately_sensitive:
plot1_inc: output/zoster_inc_individual_imid.png
plot2_inc: output/zoster_inc_all_imid.png
plot1_cum: output/zoster_cum_individual_imid.png
plot2_cum: output/zoster_cum_all_imid.png
plot3_inc: output/zoster_individual_imid_gender.png
plot4_inc: output/zoster_all_imid_gender.png
plot3_cum: output/zoster_cum_individual_imid_gender.png
plot4_cum: output/zoster_cum_all_imid_gender.png
Timeline
-
Created:
-
Started:
-
Finished:
-
Runtime: 00:01:39
These timestamps are generated and stored using the UTC timezone on the TPP backend.
Job information
- Status
-
Succeeded
- Backend
- TPP
- Workspace
- zoster_incidence_imids
- Requested by
- Zijing Yang
- Branch
- main
- Force run dependencies
- No
- Git commit hash
- 24fc715
- Requested actions
-
-
KM_sub_plot
-
Code comparison
Compare the code used in this Job Request