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Job request: 3816

Organisation:
Bennett Institute
Workspace:
rct-test
ID:
mwuamtdf45x5gh6h
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Helen Curtis requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_study_population
    Status:
    Status: Succeeded
    Job identifier:
    jlguq7foqanihsxj
  • Action:
    generate_summary
    Status:
    Status: Failed
    Job identifier:
    f4ow5vgokie3loqg
    Error:
    nonzero_exit: Job exited with an error code

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 1000

actions:

  generate_study_population:
    run: cohortextractor:latest generate_cohort --study-definition study_definition --output-format=feather
    outputs:
      highly_sensitive:
        cohort: output/input.feather
  
  generate_summary:
    run: python:latest python analysis/summary.py
    needs: [generate_study_population]
    outputs:
      moderately_sensitive:
        table1: output/summary1.csv
        table2: output/summary2.csv
        table3: output/summary3.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:01:59

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
rct-test
Requested by
Helen Curtis
Branch
main
Force run dependencies
No
Git commit hash
f2c86ce
Requested actions
  • generate_study_population
  • generate_summary

Code comparison

Compare the code used in this job request