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Job request: 385

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
t1dm_post_covid
ID:
ehgrkmtu3vijjwt2
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Kevin Wing requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_cohorts
    Status:
    Status: Succeeded
    Job identifier:
    s4k7fyfsrsj3wal6
  • Action:
    01_cr_dataset
    Status:
    Status: Failed
    Job identifier:
    fzobwq5nuhlzqajs
    Error:
    Job exited with an error code

Pipeline

Show project.yaml 
version: "3.0"

expectations:
  population_size: 10000

actions:
  generate_cohorts:
    run: cohortextractor:latest generate_cohort
    outputs:
      highly_sensitive:
        cohort: output/input.csv


  01_cr_dataset:
    run: stata-mp:latest analysis/01_t1dm_cr_analysis_dataset.do
    needs: [generate_cohorts]
    outputs:
      highly_sensitive:
        analysis_dataset: output/analysis_dataset.dta
        analysis_dataset_formatching: output/analysis_dataset_formatching.dta
        analysis_dataset_formatching10PercentSample: output/analysis_dataset_formatchingTENPERCENT.dta
      moderately_sensitive:
        log: released_analysis_results/01_t1dm_cr_create_analysis_dataset.log


  02_perform_matching:
    run: stata-mp:latest analysis/02_t1dm_perform_matching.do
    needs: [01_cr_dataset]
    outputs:
      highly_sensitive:
        analysis_dataset: output/getmatchedcohortt1dm.dta
      moderately_sensitive:
        log: released_analysis_results/02_t1dm_cr_matched_cohort.log

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:00:28

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
t1dm_post_covid
Requested by
Kevin Wing
Branch
master
Force run dependencies
Yes
Git commit hash
d6a5c0d
Requested actions
  • 01_cr_dataset

Code comparison

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