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Job request: 484

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
t1dm_post_covid
ID:
3vsmkkdo63e2rceb
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Kevin Wing requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: "3.0"

expectations:
  population_size: 10000

actions:
  generate_cohorts:
    run: cohortextractor:latest generate_cohort
    outputs:
      highly_sensitive:
        cohort: output/input.csv


  01_cr_dataset:
    run: stata-mp:latest analysis/01_t1dm_cr_analysis_dataset.do
    needs: [generate_cohorts]
    outputs:
      highly_sensitive:
        analysis_dataset: output/analysis_dataset.dta
        analysis_dataset_formatching: output/analysis_dataset_formatching.dta
        analysis_dataset_formatching10PercentSample: output/analysis_dataset_formatchingTENPERCENT.dta
      moderately_sensitive:
        log: released_analysis_results/01_t1dm_cr_create_analysis_dataset.log


  02_perform_matching:
    run: stata-mp:latest analysis/02_t1dm_perform_matching.do
    needs: [01_cr_dataset]
    outputs:
      highly_sensitive:
        analysis_dataset: output/getmatchedcohortt1dm.dta
      moderately_sensitive:
        log: released_analysis_results/02_t1dm_cr_matched_cohort.log

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:00:24

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Succeeded
Backend
TPP
Workspace
t1dm_post_covid
Requested by
Kevin Wing
Branch
master
Force run dependencies
Yes
Git commit hash
d6a5c0d
Requested actions
  • generate_cohorts

Code comparison

Compare the code used in this Job Request