Skip to content

Job request: 13479

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
cis-pop-validation-ehrql-dev
ID:
ooxez54jgcauxo2o
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Milan Wiedemann requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 1000

actions:

  generate_dataset_cohortextractor:
    run: >
      cohortextractor:latest generate_cohort 
        --study-definition study_definition
        --index-date-range '2022-09-25 to 2022-09-25 by week' 
        --output-dir 'output'
        --output-file "output/dataset_cohortextractor.csv"
        --output-format csv
    outputs:
      highly_sensitive:
        cohort: output/dataset_cohortextractor_2022-09-25.csv

  generate_dataset_ehrql:
    run: >
      databuilder:v0
        generate-dataset analysis/dataset_definition.py 
        --output output/dataset_ehrql_2022-09-25.csv
        --dummy-tables dummy_data
    outputs:
      highly_sensitive:
        cohort: output/dataset_ehrql_2022-09-25.csv
 
  # calculate_dataset_diff:
  #   run: >
  #     r:latest analysis/dataset_diff.R
  #   needs:
  #     - generate_dataset_cohortextractor
  #     - generate_dataset_ehrql
  #   outputs:
  #     moderately_sensitive:
  #       cohort: output/diff/dataset_diff_summary.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime:

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Failed 
JobRequestError: Internal error
Backend
TPP
Workspace
cis-pop-validation-ehrql-dev
Requested by
Milan Wiedemann
Branch
dev
Force run dependencies
No
Git commit hash
7b64962
Requested actions
  • generate_dataset_ehrql

Code comparison

Compare the code used in this Job Request