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Job request: 3774

Workspace:
germdefence
ID:
a5qwupfl3yk6nq5b

This page shows the technical details of what happened when authorised researcher Scott Walter requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the indicated Requested Actions with the Pipeline section below, you can infer what security level various outputs were written to. Outputs marked as highly_sensitive can never be viewed directly by a researcher; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

  • Action:
    run_model
    Status:
    Status: Failed
    Job identifier:
    3m52ii4ejp3ejbla

Pipeline

Show project.yaml
version: '3.0'

expectations:
  population_size: 10000

actions:

  generate_study_population:
#    run: cohortextractor:latest generate_cohort --study-definition study_definition --index-date-range "2020-07-14 to 2021-03-15 by week" --skip-existing --output-format=csv.gz --output-dir=output/measures
    run: cohortextractor:latest generate_cohort --study-definition study_definition --index-date-range "2020-10-20 to 2021-12-01 by week" --skip-existing --output-format=csv.gz --output-dir=output/measures
    outputs:
      highly_sensitive:
        cohort: output/measures/input_*.csv.gz


  generate_measures:
    run: cohortextractor:latest generate_measures --study-definition study_definition --skip-existing --output-dir=output/measures
    needs: [generate_study_population]
    outputs:
      highly_sensitive:
        measure_csv: output/measures/measure_*.csv

  run_model:
    run: stata-mp:latest analysis/model_test.do
    needs: [generate_measures]
    outputs:
      moderately_sensitive:
        model: output/PerProtocol.xlsx
        log: output/log.log

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime:

These timestamps are generated and stored using the UTC timezone on the backend.

Job information

Status
Failed
No outputs found matching patterns:
 - output/log.log
Backend
TPP
Workspace
germdefence
Requested by
Scott Walter
Branch
main
Force run dependencies
No
Git commit hash
6f8d37b
Requested actions
  • run_model