This page shows the technical details of what happened when authorised researcher Venexia Walker requested one or more actions to be run against real patient data in the post-covid-bristol project, within a secure environment.
By cross-referencing the indicated Requested Actions with the Pipeline section below, you can infer what
security level various outputs were written to. Outputs
highly_sensitive can never be viewed directly by a
researcher; they can only request that code runs against them. Outputs marked as
moderately_sensitive can be
viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as
moderately_sensitive can be requested for release to the public, via a controlled output review service.
Show Hide project.yaml
version: '3.0' expectations: population_size: 10000 actions: generate_study_population: run: cohortextractor:latest generate_cohort --study-definition study_definition outputs: highly_sensitive: cohort: output/input.csv covariate_check_ages_40_60_80: run: r:latest analysis/covariate_check.R 40_60_80 needs: [generate_study_population] outputs: moderately_sensitive: covariate_check_ages: output/covariate_check_ages_40_60_80.csv mdl1_unadj: run: r:latest analysis/vw_01_pipe.R mdl1_unadj AMI all needs: [generate_study_population] outputs: moderately_sensitive: tbl_event_count: output/tbl_event_count_mdl1_unadj_infection_AMI_all.csv tbl_event_count_red: output/tbl_event_count_red_mdl1_unadj_infection_AMI_all.csv tbl_hr: output/tbl_hr_mdl1_unadj_infection_AMI_all.csv mdl3b_fullyadj: run: r:latest analysis/vw_01_pipe.R mdl3b_fullyadj AMI all needs: [generate_study_population] outputs: moderately_sensitive: tbl_event_count: output/tbl_event_count_mdl3b_fullyadj_infection_AMI_all.csv tbl_event_count_red: output/tbl_event_count_red_mdl3b_fullyadj_infection_AMI_all.csv tbl_hr: output/tbl_hr_mdl3b_fullyadj_infection_AMI_all.csv
State is inferred from the related Jobs.
Timings set to UTC timezone.
- Runtime: 05:16:54