This page shows the technical details of what happened when authorised researcher Venexia Walker requested one or more actions to be run against real patient data in the post-covid-bristol project, within a secure environment.
By cross-referencing the indicated Requested Actions with the Pipeline section below, you can infer what
security level various outputs were written to. Outputs
marked as highly_sensitive can never be viewed directly by a
researcher; they can only request that code runs against them. Outputs marked as moderately_sensitive can be
viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as
moderately_sensitive can be requested for release to the public, via a controlled output review service.
Jobs
| ID | Status | Action |
|---|---|---|
| 7soeqyavgmfwsupt | succeeded | mdl3b_fullyadj |
Pipeline
Show Hide project.yaml
version: '3.0'
expectations:
population_size: 10000
actions:
generate_study_population:
run: cohortextractor:latest generate_cohort --study-definition study_definition
outputs:
highly_sensitive:
cohort: output/input.csv
covariate_check_ages_40_60_80:
run: r:latest analysis/covariate_check.R 40_60_80
needs: [generate_study_population]
outputs:
moderately_sensitive:
covariate_check_ages: output/covariate_check_ages_40_60_80.csv
mdl1_unadj:
run: r:latest analysis/vw_01_pipe.R mdl1_unadj AMI all
needs: [generate_study_population]
outputs:
moderately_sensitive:
tbl_event_count: output/tbl_event_count_mdl1_unadj_infection_AMI_all.csv
tbl_hr: output/tbl_hr_mdl1_unadj_infection_AMI_all.csv
mdl3b_fullyadj:
run: r:latest analysis/vw_01_pipe.R mdl3b_fullyadj AMI all
needs: [generate_study_population]
outputs:
moderately_sensitive:
tbl_event_count: output/tbl_event_count_mdl3b_fullyadj_infection_AMI_all.csv
tbl_hr: output/tbl_hr_mdl3b_fullyadj_infection_AMI_all.csv
State
State is inferred from the related Jobs.
Status: Succeeded
Timings
Timings set to UTC timezone.
- Created:
- Started:
- Finished:
- Runtime: 03:31:10
Config
-
- Backend:
-
TPP
-
- Workspace:
- nhsdtre_replication
-
- Branch:
main
-
- Creator:
- venexia
-
- Force run dependencies:
- False
-
- Git Commit Hash:
- 3acc9d6
-
Requested actions:
mdl3b_fullyadj