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Job request: 6386

Organisation:
NHSE/I
Workspace:
nhs_at_home_main
ID:
et2jtni3w67azgoy
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Alexandra Benson requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 1000

actions:

  generate_study_population:
    run: cohortextractor:latest generate_cohort --study-definition study_definition --index-date-range "2019-04-01 to 2022-03-15 by week"
    outputs:
      highly_sensitive:
        cohort: output/input_*.csv

  generate_oximetry_timeseries:
    run: python:latest python analysis/analysis1.py
    needs: [generate_study_population]
    outputs:
      moderately_sensitive:
        table_1_oximetry_counts: output/table_1_oximetry_counts.csv
        plot_1_oximetry_timeseries: output/plot_1_oximetry_timeseries.png

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:01:40

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Succeeded
Backend
TPP
Workspace
nhs_at_home_main
Requested by
Alexandra Benson
Branch
main
Force run dependencies
No
Git commit hash
59e22be
Requested actions
  • generate_oximetry_timeseries

Code comparison

Compare the code used in this Job Request