Job request: 8039
- Organisation:
- NHSE/I
- Workspace:
- nhs_at_home_main
- ID:
- pbmvydvtmczngnb7
This page shows the technical details of what happened when the authorised researcher Alexandra Benson requested one or more actions to be run against real patient data in the project, within a secure environment.
By cross-referencing the list of jobs with the
pipeline section below, you can infer what
security level
various outputs were written to. Researchers can never directly
view outputs marked as
highly_sensitive
;
they can only request that code runs against them. Outputs
marked as
moderately_sensitive
can be viewed by an approved researcher by logging into a highly
secure environment. Only outputs marked as
moderately_sensitive
can be requested for release to the public, via a controlled
output review service.
Jobs
-
- Job identifier:
-
xdt4ooemx7nn5gio - Error:
- nonzero_exit: Job exited with error code 5: Something went wrong with the database, please contact tech support
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- Job identifier:
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75gteqtjl6l43tl3 - Error:
- nonzero_exit: Job exited with error code 5: Something went wrong with the database, please contact tech support
-
- Job identifier:
-
6zdif3lr5j6czkkk - Error:
- nonzero_exit: Job exited with error code 5: Something went wrong with the database, please contact tech support
-
- Job identifier:
-
aggvvstvv2rylqq2 - Error:
- dependency_failed: Not starting as dependency failed
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- Job identifier:
-
24qtiznvhyrukfht - Error:
- dependency_failed: Not starting as dependency failed
-
- Job identifier:
-
bqkawzvpknhr3fa6 - Error:
- dependency_failed: Not starting as dependency failed
-
- Job identifier:
-
dt3ypyw2wjhgithf - Error:
- dependency_failed: Not starting as dependency failed
-
- Job identifier:
-
uehuptgxs72gwt6x - Error:
- dependency_failed: Not starting as dependency failed
-
- Job identifier:
-
4ha5pnokfdckjb4a - Error:
- dependency_failed: Not starting as dependency failed
Pipeline
Show project.yaml
version: "3.0"
expectations:
population_size: 1000
actions:
generate_study_population_oximetry:
run: cohortextractor:latest generate_cohort --study-definition study_definition_oximetry --index-date-range "2019-04-01 to 2022-05-12 by week"
outputs:
highly_sensitive:
oximetry_cohort: output/input_oximetry*.csv
generate_study_population_bp:
run: cohortextractor:latest generate_cohort --study-definition study_definition_bp --index-date-range "2019-04-01 to 2022-05-12 by week"
outputs:
highly_sensitive:
bp_cohort: output/input_bp*.csv
generate_study_population_proactive:
run: cohortextractor:latest generate_cohort --study-definition study_definition_proactive --index-date-range "2019-04-01 to 2022-05-12 by week"
outputs:
highly_sensitive:
proactive_cohort: output/input_proactive*.csv
generate_oximetry_timeseries:
run: python:latest python analysis/analysis_oximetry_timeseries.py
needs: [generate_study_population_oximetry]
outputs:
moderately_sensitive:
oximetry_table_counts: output/oximetry_table_counts.csv
oximetry_plot_timeseries: output/oximetry_plot_timeseries.png
generate_oximetry_regional_timeseries:
run: python:latest python analysis/analysis_oximetry_region.py
needs: [generate_study_population_oximetry]
outputs:
moderately_sensitive:
oximetry_table_counts_region: output/oximetry_table_counts_*.csv
oximetry_plot_timeseries_region: output/oximetry_plot_timeseries_region_*.png
generate_oximetry_breakdowns:
run: python:latest python analysis/analysis_oximetry_breakdowns.py
needs: [generate_study_population_oximetry]
outputs:
moderately_sensitive:
oximetry_table_breakdowns: output/oximetry_table_code_*.csv
oximetry_plot_breakdowns: output/oximetry_plot_code_*.png
generate_bp_timeseries:
run: python:latest python analysis/analysis_bp_timeseries.py
needs: [generate_study_population_bp]
outputs:
moderately_sensitive:
bp_table_counts: output/bp_table_counts.csv
bp_plot_timeseries: output/bp_plot_timeseries.png
generate_bp_regional_timeseries:
run: python:latest python analysis/analysis_bp_region.py
needs: [generate_study_population_bp]
outputs:
moderately_sensitive:
bp_table_counts_region: output/bp_table_counts_*.csv
bp_plot_timeseries_region: output/bp_plot_timeseries_region_*.png
generate_bp_breakdowns:
run: python:latest python analysis/analysis_bp_breakdowns.py
needs: [generate_study_population_bp]
outputs:
moderately_sensitive:
bp_table_breakdowns: output/bp_table_code_*.csv
bp_plot_breakdowns: output/bp_plot_code_*.png
generate_proactive_timeseries:
run: python:latest python analysis/analysis_proactive_timeseries.py
needs: [generate_study_population_proactive]
outputs:
moderately_sensitive:
proactive_table_counts: output/proactive_table_counts.csv
proactive_plot_timeseries: output/proactive_plot_timeseries.png
generate_proactive_regional_timeseries:
run: python:latest python analysis/analysis_proactive_region.py
needs: [generate_study_population_proactive]
outputs:
moderately_sensitive:
proactive_table_counts_region: output/proactive_table_counts_*.csv
proactive_plot_timeseries_region: output/proactive_plot_timeseries_region_*.png
generate_proactive_breakdowns:
run: python:latest python analysis/analysis_proactive_breakdowns.py
needs: [generate_study_population_proactive]
outputs:
moderately_sensitive:
proactive_table_breakdowns: output/proactive_table_code_*.csv
proactive_plot_breakdowns: output/proactive_plot_code_*.png
Timeline
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Created:
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Started:
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Finished:
-
Runtime: 11:53:33
These timestamps are generated and stored using the UTC timezone on the TPP backend.
Job information
- Status
-
Failed
- Backend
- TPP
- Workspace
- nhs_at_home_main
- Requested by
- Alexandra Benson
- Branch
- main
- Force run dependencies
- Yes
- Git commit hash
- 318f6ab
- Requested actions
-
-
generate_study_population_oximetry -
generate_study_population_bp -
generate_study_population_proactive -
generate_oximetry_timeseries -
generate_oximetry_breakdowns -
generate_bp_timeseries -
generate_bp_breakdowns -
generate_proactive_timeseries -
generate_proactive_breakdowns
-
Code comparison
Compare the code used in this Job Request