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Job request: 443

Organisation:
NHSX
Workspace:
vaccine_eligibility_master
ID:
3l3xwnyyrof42awh
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Jonny Pearson requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

  • Action:
    generate_cohort
    Status:
    Status: Succeeded
    Job identifier:
    zx3dqxoeodkvv3bu
  • Action:
    run_notebook
    Status:
    Status: Succeeded
    Job identifier:
    6cmlkjj54n4ay6bi
  • Action:
    generate_report
    Status:
    Status: Succeeded
    Job identifier:
    6ouxo6ognvztanzw

Pipeline

Show project.yaml 
version: "3.0"

expectations:
  population_size: 10000

actions:
  generate_cohort:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.csv

  generate_report:
    run: python:latest python analysis/report.py output output
    needs: [generate_cohort]
    outputs:
      moderately_sensitive:
        report: output/descriptives.html

  run_notebook:
    run: jupyter:latest jupyter nbconvert /workspace/analysis/Study_Analysis.ipynb --execute --to html --output-dir=/workspace/output --ExecutePreprocessor.timeout=86400
    needs: [generate_cohort]
    outputs:
      moderately_sensitive:
        notebook: output/Study_Analysis.html
        csv1: output/PriorityCounts_NoWorkforce.csv
        csv2: output/PriorityCounts_WithWorkforce.csv
        csv3: output/clinExtrVuln_propensity.csv
        csv4: output/atRisk_propensity.csv
        png1: output/waterfall_age.png
        png2: output/waterfall_wf.png

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:00:32

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Succeeded
Backend
TPP
Workspace
vaccine_eligibility_master
Requested by
Jonny Pearson
Branch
master
Force run dependencies
No
Git commit hash
1e3cf15
Requested actions
  • run_all

Code comparison

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