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Job request: 5258

Organisation:
Bennett Institute
Workspace:
booster-effectiveness_main
ID:
2qfg3uhvq2upiflc
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Will Hulme requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    extract
    Status:
    Succeeded
    Job identifier:
    svq6c5pelr2wpg4a
  • Action:
    data_process
    Status:
    Succeeded
    Job identifier:
    oflfml6vapfluyde
  • Action:
    data_process_long
    Status:
    Succeeded
    Job identifier:
    b7invqj6ac6bju3g
  • Action:
    data_selection
    Status:
    Succeeded
    Job identifier:
    roq72ue2jtgqv74e
  • Action:
    descriptive_vaxdate
    Status:
    Succeeded
    Job identifier:
    lyl7nxfgwg2z44su
  • Action:
    match_seqtrialcox_pfizer
    Status:
    Succeeded
    Job identifier:
    tlppur6dbispa6fe
  • Action:
    descriptive_table1
    Status:
    Succeeded
    Job identifier:
    iogjlp73n4dqlic6
  • Action:
    match_seqtrialcox_moderna
    Status:
    Succeeded
    Job identifier:
    hosh44ycqgga73py
  • Action:
    merge_seqtrialcox_moderna
    Status:
    Succeeded
    Job identifier:
    4mankz5rjxostq4l
  • Action:
    model_seqtrialcox_moderna_covidadmitted
    Status:
    Failed
    Job identifier:
    fdy5ikn3bit2yzqb
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    model_seqtrialcox_moderna_postest
    Status:
    Failed
    Job identifier:
    z4iracjpfs6t5phy
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    model_seqtrialcox_moderna_covidemergency
    Status:
    Failed
    Job identifier:
    5pevne2jqd5d22fl
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    model_seqtrialcox_moderna_coviddeath
    Status:
    Failed
    Job identifier:
    x7b7lx7hmdejxk4y
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    model_seqtrialcox_moderna_covidcc
    Status:
    Failed
    Job identifier:
    64e2icivpk7fdwc4
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    merge_seqtrialcox_pfizer
    Status:
    Succeeded
    Job identifier:
    kg43dy4yklodymdu
  • Action:
    model_seqtrialcox_pfizer_covidemergency
    Status:
    Failed
    Job identifier:
    2s25nthmt72n5t3c
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    model_seqtrialcox_pfizer_covidadmitted
    Status:
    Failed
    Job identifier:
    57twa5ykpmeyjr5e
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    model_seqtrialcox_pfizer_covidcc
    Status:
    Failed
    Job identifier:
    d7jplt5sgj3qxx6j
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    model_seqtrialcox_pfizer_postest
    Status:
    Failed
    Job identifier:
    73tevnibuxzrd3wy
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    model_seqtrialcox_pfizer_coviddeath
    Status:
    Failed
    Job identifier:
    zbg7xa7vdvxlayhn
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    report_seqtrialcox_pfizer_covidcc
    Status:
    Failed
    Job identifier:
    fvtjx6mtslmmooio
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    manuscript_objects
    Status:
    Failed
    Job identifier:
    ojooqr65wsmka6w7
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    report_seqtrialcox_moderna_covidcc
    Status:
    Failed
    Job identifier:
    jefi74vk5kvp3st5
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    report_seqtrialcox_moderna_covidadmitted
    Status:
    Failed
    Job identifier:
    l3brb4u5sundyh4w
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    report_seqtrialcox_moderna_covidemergency
    Status:
    Failed
    Job identifier:
    46flz4ov6ms5xmnd
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    report_seqtrialcox_moderna_postest
    Status:
    Failed
    Job identifier:
    wmqhvxl24nbahjlz
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    report_seqtrialcox_pfizer_coviddeath
    Status:
    Failed
    Job identifier:
    6cil3jqvlyjo3olg
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    report_seqtrialcox_pfizer_covidemergency
    Status:
    Failed
    Job identifier:
    2hjiuvtxnddmemir
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    report_seqtrialcox_pfizer_postest
    Status:
    Failed
    Job identifier:
    2exrtrv5bmqyuyge
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    report_seqtrialcox_moderna_coviddeath
    Status:
    Failed
    Job identifier:
    lhi5pht5rn2jxwoh
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    report_seqtrialcox_pfizer_covidadmitted
    Status:
    Failed
    Job identifier:
    u57l7hj75ho6heh6
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    combine_seqtrialcox
    Status:
    Failed
    Job identifier:
    55r3vdxq2wbtsjs6
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 09:07:37

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
booster-effectiveness_main
Requested by
Will Hulme
Branch
main
Force run dependencies
No
Git commit hash
d8c133a
Requested actions
  • extract
  • data_process
  • data_process_long
  • data_selection
  • descriptive_table1
  • descriptive_vaxdate
  • match_seqtrialcox_pfizer
  • merge_seqtrialcox_pfizer
  • match_seqtrialcox_moderna
  • merge_seqtrialcox_moderna
  • model_seqtrialcox_pfizer_postest
  • report_seqtrialcox_pfizer_postest
  • model_seqtrialcox_moderna_postest
  • report_seqtrialcox_moderna_postest
  • model_seqtrialcox_pfizer_covidemergency
  • report_seqtrialcox_pfizer_covidemergency
  • model_seqtrialcox_moderna_covidemergency
  • report_seqtrialcox_moderna_covidemergency
  • model_seqtrialcox_pfizer_covidadmitted
  • report_seqtrialcox_pfizer_covidadmitted
  • model_seqtrialcox_moderna_covidadmitted
  • report_seqtrialcox_moderna_covidadmitted
  • model_seqtrialcox_pfizer_covidcc
  • report_seqtrialcox_pfizer_covidcc
  • model_seqtrialcox_moderna_covidcc
  • report_seqtrialcox_moderna_covidcc
  • model_seqtrialcox_pfizer_coviddeath
  • report_seqtrialcox_pfizer_coviddeath
  • model_seqtrialcox_moderna_coviddeath
  • report_seqtrialcox_moderna_coviddeath
  • combine_seqtrialcox
  • manuscript_objects

Code comparison

Compare the code used in this job request