Skip to content

Job request: 5599

Organisation:
Bennett Institute
Workspace:
booster-effectiveness_main
ID:
ku4qys6642bvmzpm
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Will Hulme requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    extract
    Status:
    Succeeded
    Job identifier:
    ucv6j6nohb4c3kj4
  • Action:
    data_process
    Status:
    Succeeded
    Job identifier:
    y2324k4dcgewgrq4
  • Action:
    data_selection
    Status:
    Succeeded
    Job identifier:
    mljxe5w34fhxbpql
  • Action:
    data_process_long
    Status:
    Succeeded
    Job identifier:
    uqv7qs5afpzcr4y4
  • Action:
    skim_process
    Status:
    Succeeded
    Job identifier:
    ohuwm3yp6n534ad6
  • Action:
    skim_selection
    Status:
    Succeeded
    Job identifier:
    x7j3sawusnb7gw7v
  • Action:
    descriptive_vaxdate
    Status:
    Succeeded
    Job identifier:
    pwhsb3j65p4fsd3w
  • Action:
    descriptive_table1
    Status:
    Succeeded
    Job identifier:
    bp23ki64fgwzmxzf
  • Action:
    match_seqtrialcox_moderna
    Status:
    Failed
    Job identifier:
    fdijqmhdsadjiomw
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    match_seqtrialcox_pfizer
    Status:
    Failed
    Job identifier:
    5ajik4hvurvws7o4
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    report_seqtrialcox_pfizer_postest_vax12_type-pfizer-pfizer
    Status:
    Failed
    Job identifier:
    p2g6ll6gluh34azn
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    combine_model_vax12_type
    Status:
    Failed
    Job identifier:
    zdlcfidzku43coyj
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    combine_match
    Status:
    Failed
    Job identifier:
    wzmqehidnjs2jpic
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    combine_model
    Status:
    Failed
    Job identifier:
    7fd5db5xh7tmun22
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    model_seqtrialcox_moderna_covidadmitted_vax12_type-az-az
    Status:
    Failed
    Job identifier:
    fc75bz574ig75dlc
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    model_seqtrialcox_moderna_covidadmitted_vax12_type-pfizer-pfizer
    Status:
    Failed
    Job identifier:
    m4e7gkjl6r3wx7r6
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    model_seqtrialcox_moderna_coviddeath_vax12_type-az-az
    Status:
    Failed
    Job identifier:
    dvqqbzmblrhtnpy3
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    model_seqtrialcox_moderna_coviddeath_vax12_type-pfizer-pfizer
    Status:
    Failed
    Job identifier:
    cefaishemn54buoi
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    manuscript_objects
    Status:
    Failed
    Job identifier:
    6gsnk3xocqqsudk3
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    report_seqtrialcox_moderna_covidadmitted_vax12_type-az-az
    Status:
    Failed
    Job identifier:
    e25hc35l6mrjyy45
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    report_seqtrialcox_moderna_coviddeath_none
    Status:
    Failed
    Job identifier:
    jqnpdg7xcfhjgwme
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    report_seqtrialcox_moderna_coviddeath_vax12_type-az-az
    Status:
    Failed
    Job identifier:
    ygmtfhuwzfkmp3co
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    report_seqtrialcox_moderna_coviddeath_vax12_type-pfizer-pfizer
    Status:
    Failed
    Job identifier:
    4a64ety44jimqkda
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    report_seqtrialcox_moderna_postest_none
    Status:
    Failed
    Job identifier:
    hbb55aarzyntbjlb
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    report_seqtrialcox_moderna_postest_vax12_type-pfizer-pfizer
    Status:
    Failed
    Job identifier:
    5fb5irgjergqxoi5
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    report_seqtrialcox_pfizer_covidadmitted_none
    Status:
    Failed
    Job identifier:
    l6uym6tobnfc3htb
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    model_seqtrialcox_moderna_postest_vax12_type-pfizer-pfizer
    Status:
    Failed
    Job identifier:
    kbapp22w75yfg6a3
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    model_seqtrialcox_pfizer_covidadmitted_vax12_type-az-az
    Status:
    Failed
    Job identifier:
    qccwshk7r2dfelgs
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    model_seqtrialcox_pfizer_covidadmitted_vax12_type-pfizer-pfizer
    Status:
    Failed
    Job identifier:
    wtmxyaso6ye5pgxr
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    model_seqtrialcox_pfizer_coviddeath_vax12_type-az-az
    Status:
    Failed
    Job identifier:
    w2vojv6thxwumsg5
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    model_seqtrialcox_pfizer_coviddeath_vax12_type-pfizer-pfizer
    Status:
    Failed
    Job identifier:
    emiofoxcgzpvuwab
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    merge_seqtrialcox_moderna
    Status:
    Failed
    Job identifier:
    4fag5kqytfg3tkky
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    merge_seqtrialcox_pfizer
    Status:
    Failed
    Job identifier:
    mbul7mfesdej4d4j
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    model_seqtrialcox_moderna_postest_none
    Status:
    Failed
    Job identifier:
    fanzzfjmowf6suya
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    model_seqtrialcox_moderna_postest_vax12_type-az-az
    Status:
    Failed
    Job identifier:
    ec55jgfenwu7ybqz
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    model_seqtrialcox_pfizer_postest_none
    Status:
    Failed
    Job identifier:
    kdty2m47qhzqx33s
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    model_seqtrialcox_pfizer_postest_vax12_type-az-az
    Status:
    Failed
    Job identifier:
    qureemyyzo3ecfgp
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    report_seqtrialcox_moderna_covidadmitted_none
    Status:
    Failed
    Job identifier:
    wj6y455fjrugqual
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    report_seqtrialcox_pfizer_covidadmitted_vax12_type-az-az
    Status:
    Failed
    Job identifier:
    r2sw6i72l6ezlqbr
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    report_seqtrialcox_pfizer_coviddeath_none
    Status:
    Failed
    Job identifier:
    focarjhed7qnqp2c
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    report_seqtrialcox_pfizer_coviddeath_vax12_type-az-az
    Status:
    Failed
    Job identifier:
    nusxmk4uzwz2rhbc
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    report_seqtrialcox_pfizer_postest_none
    Status:
    Failed
    Job identifier:
    xggbfuyfofue6fy5
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    report_seqtrialcox_pfizer_postest_vax12_type-az-az
    Status:
    Failed
    Job identifier:
    xwurfi6hxvfwf2a6
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    model_seqtrialcox_moderna_covidadmitted_none
    Status:
    Failed
    Job identifier:
    wk2fsef4fych57kk
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    model_seqtrialcox_moderna_coviddeath_none
    Status:
    Failed
    Job identifier:
    ygnnatbh3lbuuhnb
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    model_seqtrialcox_pfizer_covidadmitted_none
    Status:
    Failed
    Job identifier:
    lkm5muyzloqcwtgp
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    model_seqtrialcox_pfizer_coviddeath_none
    Status:
    Failed
    Job identifier:
    ukc7osgich22ugue
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    model_seqtrialcox_pfizer_postest_vax12_type-pfizer-pfizer
    Status:
    Failed
    Job identifier:
    atmu37jjbdtl6o5h
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    report_seqtrialcox_moderna_covidadmitted_vax12_type-pfizer-pfizer
    Status:
    Failed
    Job identifier:
    xjhr43v5npqnsgtm
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    report_seqtrialcox_moderna_postest_vax12_type-az-az
    Status:
    Failed
    Job identifier:
    p3omzchgekyftk22
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    report_seqtrialcox_pfizer_covidadmitted_vax12_type-pfizer-pfizer
    Status:
    Failed
    Job identifier:
    xh4nv66e3frundhe
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    report_seqtrialcox_pfizer_coviddeath_vax12_type-pfizer-pfizer
    Status:
    Failed
    Job identifier:
    fqaozm22u7f2s6qb
    Error:
    cancelled_by_user: Cancelled by user

Pipeline

Show project.yaml
This file is too large to render, try viewing it on GitHub .

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 34:17:22

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
booster-effectiveness_main
Requested by
Will Hulme
Branch
main
Force run dependencies
No
Git commit hash
93df74d
Requested actions
  • extract
  • data_process
  • skim_process
  • data_process_long
  • data_selection
  • skim_selection
  • descriptive_table1
  • descriptive_vaxdate
  • match_seqtrialcox_pfizer
  • merge_seqtrialcox_pfizer
  • match_seqtrialcox_moderna
  • merge_seqtrialcox_moderna
  • model_seqtrialcox_pfizer_postest_none
  • report_seqtrialcox_pfizer_postest_none
  • model_seqtrialcox_pfizer_postest_vax12_type-az-az
  • report_seqtrialcox_pfizer_postest_vax12_type-az-az
  • model_seqtrialcox_pfizer_postest_vax12_type-pfizer-pfizer
  • report_seqtrialcox_pfizer_postest_vax12_type-pfizer-pfizer
  • model_seqtrialcox_moderna_postest_none
  • report_seqtrialcox_moderna_postest_none
  • model_seqtrialcox_moderna_postest_vax12_type-az-az
  • report_seqtrialcox_moderna_postest_vax12_type-az-az
  • model_seqtrialcox_moderna_postest_vax12_type-pfizer-pfizer
  • report_seqtrialcox_moderna_postest_vax12_type-pfizer-pfizer
  • model_seqtrialcox_pfizer_covidadmitted_none
  • report_seqtrialcox_pfizer_covidadmitted_none
  • model_seqtrialcox_pfizer_covidadmitted_vax12_type-az-az
  • report_seqtrialcox_pfizer_covidadmitted_vax12_type-az-az
  • model_seqtrialcox_pfizer_covidadmitted_vax12_type-pfizer-pfizer
  • report_seqtrialcox_pfizer_covidadmitted_vax12_type-pfizer-pfizer
  • model_seqtrialcox_moderna_covidadmitted_none
  • report_seqtrialcox_moderna_covidadmitted_none
  • model_seqtrialcox_moderna_covidadmitted_vax12_type-az-az
  • report_seqtrialcox_moderna_covidadmitted_vax12_type-az-az
  • model_seqtrialcox_moderna_covidadmitted_vax12_type-pfizer-pfizer
  • report_seqtrialcox_moderna_covidadmitted_vax12_type-pfizer-pfizer
  • model_seqtrialcox_pfizer_coviddeath_none
  • report_seqtrialcox_pfizer_coviddeath_none
  • model_seqtrialcox_pfizer_coviddeath_vax12_type-az-az
  • report_seqtrialcox_pfizer_coviddeath_vax12_type-az-az
  • model_seqtrialcox_pfizer_coviddeath_vax12_type-pfizer-pfizer
  • report_seqtrialcox_pfizer_coviddeath_vax12_type-pfizer-pfizer
  • model_seqtrialcox_moderna_coviddeath_none
  • report_seqtrialcox_moderna_coviddeath_none
  • model_seqtrialcox_moderna_coviddeath_vax12_type-az-az
  • report_seqtrialcox_moderna_coviddeath_vax12_type-az-az
  • model_seqtrialcox_moderna_coviddeath_vax12_type-pfizer-pfizer
  • report_seqtrialcox_moderna_coviddeath_vax12_type-pfizer-pfizer
  • combine_match
  • combine_model
  • combine_model_vax12_type
  • manuscript_objects

Code comparison

Compare the code used in this job request