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Job request: 5645

Organisation:
Bennett Institute
Workspace:
booster-effectiveness_main
ID:
rbndkvb567ozpoy5
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Will Hulme requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    extract
    Status:
    Succeeded
    Job identifier:
    rziov7z42hyzhmnn
  • Action:
    data_process
    Status:
    Succeeded
    Job identifier:
    kzj3ah53cibwwn3d
  • Action:
    skim_process
    Status:
    Succeeded
    Job identifier:
    ef2r7ieehgdrkh6e
  • Action:
    data_process_long
    Status:
    Succeeded
    Job identifier:
    uxevw2n54dlkeila
  • Action:
    data_selection
    Status:
    Succeeded
    Job identifier:
    j3ff43tz2fgqekgm
  • Action:
    descriptive_vaxdate
    Status:
    Succeeded
    Job identifier:
    a6ancv6kimvsoice
  • Action:
    skim_selection
    Status:
    Succeeded
    Job identifier:
    a6z77l3va3yao26a
  • Action:
    match_seqtrialcox_moderna
    Status:
    Failed
    Job identifier:
    e4fgyiqzpmo3op3f
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    match_seqtrialcox_pfizer
    Status:
    Failed
    Job identifier:
    7tsc6bdjb5ci573x
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    model_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-pfizer-pfizer
    Status:
    Failed
    Job identifier:
    hbtfigkc4g5xhrxb
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    merge_seqtrialcox_moderna
    Status:
    Failed
    Job identifier:
    rqxhkzato54t2fo6
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    model_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-az-az
    Status:
    Failed
    Job identifier:
    brn7hvcsf3il44d3
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    report_seqtrialcox_pfizer_covidadmitted_none
    Status:
    Failed
    Job identifier:
    m7kjlfxy3ucf4f4o
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    model_seqtrialcox_pfizer_covidadmitted_none
    Status:
    Failed
    Job identifier:
    luqj65p2i2nhdyig
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    model_seqtrialcox_pfizer_covidadmitted_vax12_type-pfizer-pfizer
    Status:
    Failed
    Job identifier:
    kmfjt2kqctoz4csb
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    combine_match
    Status:
    Failed
    Job identifier:
    hx3sfgzmkvqetesv
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    model_seqtrialcox_pfizer_coviddeath_vax12_type-az-az
    Status:
    Failed
    Job identifier:
    dqvs3ozcypcy5my2
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    model_seqtrialcox_pfizer_postest_none
    Status:
    Failed
    Job identifier:
    ljjmfjyzvg5ujorg
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    model_seqtrialcox_pfizer_postest_vax12_type-az-az
    Status:
    Failed
    Job identifier:
    nlm23e423w2uigk6
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    model_seqtrialcox_pfizer_postest_vax12_type-pfizer-pfizer
    Status:
    Failed
    Job identifier:
    xtr6if2s56tc55t7
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    report_seqtrialcox_pfizer_coviddeath_none
    Status:
    Failed
    Job identifier:
    bmuyqmcbqj32kbme
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    report_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-az-az
    Status:
    Failed
    Job identifier:
    4t42zba3jgags3si
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    report_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-pfizer-pfizer
    Status:
    Failed
    Job identifier:
    lp322ygctgn6s6uh
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    report_seqtrialcox_pfizer_coviddeath_vax12_type-pfizer-pfizer
    Status:
    Failed
    Job identifier:
    ivrfpsls7w354nln
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    report_seqtrialcox_pfizer_postest_none
    Status:
    Failed
    Job identifier:
    qtckdjlnkn5gzlev
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    report_seqtrialcox_pfizer_postest_vax12_type-az-az
    Status:
    Failed
    Job identifier:
    fmsj22a6ipyypvso
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    report_seqtrialcox_pfizer_postest_vax12_type-pfizer-pfizer
    Status:
    Failed
    Job identifier:
    aepktvmmiswfwgo5
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    model_seqtrialcox_pfizer_coviddeath_none
    Status:
    Failed
    Job identifier:
    blot6idqm722to5r
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    merge_seqtrialcox_pfizer
    Status:
    Failed
    Job identifier:
    6b2leg2qpjpwm6ty
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    model_seqtrialcox_pfizer_covidadmitted_vax12_type-az-az
    Status:
    Failed
    Job identifier:
    pknifzs4d4nslwsd
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    model_seqtrialcox_pfizer_coviddeath_vax12_type-pfizer-pfizer
    Status:
    Failed
    Job identifier:
    sqanw6tl6kml5chk
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    report_seqtrialcox_pfizer_covidadmitted_vax12_type-az-az
    Status:
    Failed
    Job identifier:
    vp453ura4wq5u4vg
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    report_seqtrialcox_pfizer_covidadmitted_vax12_type-pfizer-pfizer
    Status:
    Failed
    Job identifier:
    6aw7hdcrekskqpom
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    report_seqtrialcox_pfizer_coviddeath_vax12_type-az-az
    Status:
    Failed
    Job identifier:
    k67bdgn5cbouifkr
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    model_seqtrialcox_pfizer_covidadmittedproxy1_none
    Status:
    Failed
    Job identifier:
    hpcmyvx3pz35fvnp
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    report_seqtrialcox_pfizer_covidadmittedproxy1_none
    Status:
    Failed
    Job identifier:
    74cciapujb5spu5j
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 29:57:24

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
booster-effectiveness_main
Requested by
Will Hulme
Branch
main
Force run dependencies
No
Git commit hash
c1cf459
Requested actions
  • extract
  • data_process
  • skim_process
  • data_process_long
  • data_selection
  • skim_selection
  • descriptive_vaxdate
  • match_seqtrialcox_pfizer
  • merge_seqtrialcox_pfizer
  • match_seqtrialcox_moderna
  • merge_seqtrialcox_moderna
  • combine_match
  • model_seqtrialcox_pfizer_postest_none
  • report_seqtrialcox_pfizer_postest_none
  • model_seqtrialcox_pfizer_postest_vax12_type-az-az
  • report_seqtrialcox_pfizer_postest_vax12_type-az-az
  • model_seqtrialcox_pfizer_postest_vax12_type-pfizer-pfizer
  • report_seqtrialcox_pfizer_postest_vax12_type-pfizer-pfizer
  • model_seqtrialcox_pfizer_covidadmittedproxy1_none
  • report_seqtrialcox_pfizer_covidadmittedproxy1_none
  • model_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-az-az
  • report_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-az-az
  • model_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-pfizer-pfizer
  • report_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-pfizer-pfizer
  • model_seqtrialcox_pfizer_covidadmitted_none
  • report_seqtrialcox_pfizer_covidadmitted_none
  • model_seqtrialcox_pfizer_covidadmitted_vax12_type-az-az
  • report_seqtrialcox_pfizer_covidadmitted_vax12_type-az-az
  • model_seqtrialcox_pfizer_covidadmitted_vax12_type-pfizer-pfizer
  • report_seqtrialcox_pfizer_covidadmitted_vax12_type-pfizer-pfizer
  • model_seqtrialcox_pfizer_coviddeath_none
  • report_seqtrialcox_pfizer_coviddeath_none
  • model_seqtrialcox_pfizer_coviddeath_vax12_type-az-az
  • report_seqtrialcox_pfizer_coviddeath_vax12_type-az-az
  • model_seqtrialcox_pfizer_coviddeath_vax12_type-pfizer-pfizer
  • report_seqtrialcox_pfizer_coviddeath_vax12_type-pfizer-pfizer

Code comparison

Compare the code used in this job request