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Job request: 6159

Organisation:
Bennett Institute
Workspace:
booster-effectiveness_main
ID:
k6jaa3nx4nraylpe
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Will Hulme requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    data_selection
    Status:
    Succeeded
    Job identifier:
    jzq4ybbadz5y2zqu
  • Action:
    match_seqtrialcox_pfizer
    Status:
    Succeeded
    Job identifier:
    bvkw7fdljh5sqyjz
  • Action:
    match_seqtrialcox_moderna
    Status:
    Succeeded
    Job identifier:
    ewlvppbgdby564dl
  • Action:
    skim_selection
    Status:
    Succeeded
    Job identifier:
    imro2c25h7lgpxya
  • Action:
    merge_seqtrialcox_moderna
    Status:
    Succeeded
    Job identifier:
    6hx3dz44o7b7hsuz
  • Action:
    model_seqtrialcox_pfizer_covidadmitted_none
    Status:
    Failed
    Job identifier:
    m3ippf7js7mntemb
    Error:
    nonzero_exit: Job exited with error code 137: likely means it ran out of memory
  • Action:
    model_seqtrialcox_pfizer_noncovidadmitted_none
    Status:
    Succeeded
    Job identifier:
    oyxu6k37dulzhzu6
  • Action:
    model_seqtrialcox_pfizer_covidadmittedproxy1_none
    Status:
    Succeeded
    Job identifier:
    l2sltxfjeiz2tsst
  • Action:
    merge_seqtrialcox_pfizer
    Status:
    Succeeded
    Job identifier:
    7xwubpb74gm7nny5
  • Action:
    model_seqtrialcox_pfizer_postest_none
    Status:
    Failed
    Job identifier:
    lwxna4b2l7w4ofqv
    Error:
    nonzero_exit: Job exited with error code 137: likely means it ran out of memory
  • Action:
    model_seqtrialcox_pfizer_covidemergency_none
    Status:
    Failed
    Job identifier:
    3u3wnnxz2a547hl3
    Error:
    nonzero_exit: Job exited with error code 137: likely means it ran out of memory
  • Action:
    model_seqtrialcox_pfizer_coviddeath_none
    Status:
    Succeeded
    Job identifier:
    bwdixficaxu6pncg
  • Action:
    model_seqtrialcox_pfizer_noncoviddeath_none
    Status:
    Succeeded
    Job identifier:
    nxpyhbraaav6uc27
  • Action:
    combine_match
    Status:
    Succeeded
    Job identifier:
    wavdoveo7qmtzi4w
  • Action:
    report_seqtrialcox_pfizer_covidadmittedproxy1_none
    Status:
    Succeeded
    Job identifier:
    t7l2sqld5mkncsgk
  • Action:
    report_seqtrialcox_pfizer_coviddeath_none
    Status:
    Succeeded
    Job identifier:
    pafbjsta537mcjkq
  • Action:
    report_seqtrialcox_pfizer_noncoviddeath_none
    Status:
    Succeeded
    Job identifier:
    wdp7mrwq2x36ly5n
  • Action:
    report_seqtrialcox_pfizer_noncovidadmitted_none
    Status:
    Succeeded
    Job identifier:
    yytyitbijq5le46k
  • Action:
    report_seqtrialcox_pfizer_postest_none
    Status:
    Failed
    Job identifier:
    a67sk7vet5dj4qpa
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    report_seqtrialcox_pfizer_covidemergency_none
    Status:
    Failed
    Job identifier:
    4dvrtqhbwkhu2kqs
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    report_seqtrialcox_pfizer_covidadmitted_none
    Status:
    Failed
    Job identifier:
    whcf4g3umu3ldhem
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 44:31:08

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
booster-effectiveness_main
Requested by
Will Hulme
Branch
main
Force run dependencies
No
Git commit hash
80bb3f7
Requested actions
  • data_selection
  • skim_selection
  • match_seqtrialcox_pfizer
  • merge_seqtrialcox_pfizer
  • match_seqtrialcox_moderna
  • merge_seqtrialcox_moderna
  • combine_match
  • model_seqtrialcox_pfizer_postest_none
  • report_seqtrialcox_pfizer_postest_none
  • model_seqtrialcox_pfizer_covidemergency_none
  • report_seqtrialcox_pfizer_covidemergency_none
  • model_seqtrialcox_pfizer_covidadmittedproxy1_none
  • report_seqtrialcox_pfizer_covidadmittedproxy1_none
  • model_seqtrialcox_pfizer_covidadmitted_none
  • report_seqtrialcox_pfizer_covidadmitted_none
  • model_seqtrialcox_pfizer_noncovidadmitted_none
  • report_seqtrialcox_pfizer_noncovidadmitted_none
  • model_seqtrialcox_pfizer_coviddeath_none
  • report_seqtrialcox_pfizer_coviddeath_none
  • model_seqtrialcox_pfizer_noncoviddeath_none
  • report_seqtrialcox_pfizer_noncoviddeath_none

Code comparison

Compare the code used in this job request