Job request: 8365
- Organisation:
- DataLab
- Workspace:
- booster-effectiveness_main
- ID:
- yyxfodt4gipl3kcv
This page shows the technical details of what happened when authorised researcher Will Hulme requested one or more actions to be run against real patient data in the project, within a secure environment.
By cross-referencing the indicated Requested Actions with the
Pipeline section below, you can infer what
security level
various outputs were written to. Outputs marked as
highly_sensitive
can never be viewed directly by a researcher; they can only
request that code runs against them. Outputs marked as
moderately_sensitive
can be viewed by an approved researcher by logging into a highly
secure environment. Only outputs marked as
moderately_sensitive
can be requested for release to the public, via a controlled
output review service.
Jobs
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Pipeline
Show project.yaml
version: '3.0'
expectations:
population_size: 100000
actions:
## # # # # # # # # # # # # # # # # # # #
## DO NOT EDIT project.yaml DIRECTLY
## This file is created by create-project.R
## Edit and run create-project.R to update the project.yaml
## # # # # # # # # # # # # # # # # # # #
## # # # # # # # # # # # # # # # # # # #
## Pre-server scripts
## # # # # # # # # # # # # # # # # # # #
## # # # # # # # # # # # # # # # # # # #
## Extract and tidy
## # # # # # # # # # # # # # # # # # # #
extract:
run: cohortextractor:latest generate_cohort --study-definition study_definition
--output-format feather
needs: []
outputs:
highly_sensitive:
cohort: output/input.feather
extract_report:
run: cohort-report:v3.0.0 output/input.feather
needs:
- extract
outputs:
moderately_sensitive:
html: output/data/reports/extract/*.html
png: output/data/reports/extract/*.png
config:
output_path: output/data/reports/extract/
data_process:
run: r:latest analysis/data_process.R
needs:
- extract
outputs:
highly_sensitive:
rds: output/data/data_processed.rds
vaxlong: output/data/data_vaxlong.rds
skim_process:
run: r:latest analysis/data_skim.R output/data/data_processed.rds output/data_properties
needs:
- data_process
outputs:
moderately_sensitive:
cohort: output/data_properties/data_processed*.txt
data_process_long:
run: r:latest analysis/data_process_long.R
needs:
- data_process
outputs:
highly_sensitive:
processed: output/data/data_long*.rds
data_selection:
run: r:latest analysis/data_selection.R
needs:
- data_process
outputs:
highly_sensitive:
data: output/data/data_cohort.rds
feather: output/data/data_cohort.feather
moderately_sensitive:
flow: output/data/flowchart.csv
skim_selection:
run: r:latest analysis/data_skim.R output/data/data_cohort.rds output/data_properties
needs:
- data_selection
outputs:
moderately_sensitive:
cohort: output/data_properties/data_cohort*.txt
cohort_report:
run: cohort-report:v3.0.0 output/data/data_cohort.feather
needs:
- data_selection
outputs:
moderately_sensitive:
html: output/data/reports/cohort/*.html
png: output/data/reports/cohort/*.png
config:
output_path: output/data/reports/cohort/
## # # # # # # # # # # # # # # # # # # #
## Descriptive stats
## # # # # # # # # # # # # # # # # # # #
descriptive_table1:
run: r:latest analysis/table1.R
needs:
- data_selection
outputs:
moderately_sensitive:
html: output/descriptive/table1/*.html
csv: output/descriptive/table1/*.csv
descriptive_vaxdate:
run: r:latest analysis/vax_date.R
needs:
- data_selection
outputs:
moderately_sensitive:
png: output/descriptive/vaxdate/*.png
pdf: output/descriptive/vaxdate/*.pdf
svg: output/descriptive/vaxdate/*.svg
## # # # # # # # # # # # # # # # # # # #
## Matching
## # # # # # # # # # # # # # # # # # # #
match_seqtrialcox_pfizer:
run: r:latest analysis/match_seqtrialcox.R pfizer
needs:
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/match/pfizer/match_*.rds
moderately_sensitive:
txt: output/match/pfizer/match_*.txt
merge_seqtrialcox_pfizer:
run: r:latest analysis/merge_seqtrialcox.R pfizer
needs:
- data_process
- data_process_long
- data_selection
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
txt: output/match/pfizer/merge_*.txt
csv: output/match/pfizer/merge_*.csv
png: output/match/pfizer/merge_*.png
pdf: output/match/pfizer/merge_*.pdf
html: output/match/pfizer/merge_*.html
match_seqtrialcox_moderna:
run: r:latest analysis/match_seqtrialcox.R moderna
needs:
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/match/moderna/match_*.rds
moderately_sensitive:
txt: output/match/moderna/match_*.txt
merge_seqtrialcox_moderna:
run: r:latest analysis/merge_seqtrialcox.R moderna
needs:
- data_process
- data_process_long
- data_selection
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
txt: output/match/moderna/merge_*.txt
csv: output/match/moderna/merge_*.csv
png: output/match/moderna/merge_*.png
pdf: output/match/moderna/merge_*.pdf
html: output/match/moderna/merge_*.html
combine_match:
run: r:latest analysis/combine_match.R
needs:
- match_seqtrialcox_pfizer
- match_seqtrialcox_moderna
- merge_seqtrialcox_pfizer
- merge_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/match/combined/*.csv
## # # # # # # # # # # # # # # # # # # #
## Pfizer models
## # # # # # # # # # # # # # # # # # # #
## ### Overall models (''none'')
model_seqtrialcox_pfizer_postest_none:
run: r:latest analysis/model_seqtrialcox.R pfizer postest none
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/postest/none/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/postest/none/model_*.txt
csv: output/models/seqtrialcox/pfizer/postest/none/model_*.csv
report_seqtrialcox_pfizer_postest_none:
run: r:latest analysis/report_seqtrialcox.R pfizer postest none
needs:
- data_selection
- model_seqtrialcox_pfizer_postest_none
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/postest/none/report_*.csv
svg: output/models/seqtrialcox/pfizer/postest/none/report_*.svg
png: output/models/seqtrialcox/pfizer/postest/none/report_*.png
model_seqtrialcox_pfizer_covidemergency_none:
run: r:latest analysis/model_seqtrialcox.R pfizer covidemergency none
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/covidemergency/none/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/covidemergency/none/model_*.txt
csv: output/models/seqtrialcox/pfizer/covidemergency/none/model_*.csv
report_seqtrialcox_pfizer_covidemergency_none:
run: r:latest analysis/report_seqtrialcox.R pfizer covidemergency none
needs:
- data_selection
- model_seqtrialcox_pfizer_covidemergency_none
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/covidemergency/none/report_*.csv
svg: output/models/seqtrialcox/pfizer/covidemergency/none/report_*.svg
png: output/models/seqtrialcox/pfizer/covidemergency/none/report_*.png
model_seqtrialcox_pfizer_covidadmittedproxy1_none:
run: r:latest analysis/model_seqtrialcox.R pfizer covidadmittedproxy1 none
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/covidadmittedproxy1/none/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/covidadmittedproxy1/none/model_*.txt
csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/none/model_*.csv
report_seqtrialcox_pfizer_covidadmittedproxy1_none:
run: r:latest analysis/report_seqtrialcox.R pfizer covidadmittedproxy1 none
needs:
- data_selection
- model_seqtrialcox_pfizer_covidadmittedproxy1_none
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/none/report_*.csv
svg: output/models/seqtrialcox/pfizer/covidadmittedproxy1/none/report_*.svg
png: output/models/seqtrialcox/pfizer/covidadmittedproxy1/none/report_*.png
model_seqtrialcox_pfizer_covidadmitted_none:
run: r:latest analysis/model_seqtrialcox.R pfizer covidadmitted none
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/covidadmitted/none/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/covidadmitted/none/model_*.txt
csv: output/models/seqtrialcox/pfizer/covidadmitted/none/model_*.csv
report_seqtrialcox_pfizer_covidadmitted_none:
run: r:latest analysis/report_seqtrialcox.R pfizer covidadmitted none
needs:
- data_selection
- model_seqtrialcox_pfizer_covidadmitted_none
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/covidadmitted/none/report_*.csv
svg: output/models/seqtrialcox/pfizer/covidadmitted/none/report_*.svg
png: output/models/seqtrialcox/pfizer/covidadmitted/none/report_*.png
model_seqtrialcox_pfizer_noncovidadmitted_none:
run: r:latest analysis/model_seqtrialcox.R pfizer noncovidadmitted none
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/noncovidadmitted/none/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/noncovidadmitted/none/model_*.txt
csv: output/models/seqtrialcox/pfizer/noncovidadmitted/none/model_*.csv
report_seqtrialcox_pfizer_noncovidadmitted_none:
run: r:latest analysis/report_seqtrialcox.R pfizer noncovidadmitted none
needs:
- data_selection
- model_seqtrialcox_pfizer_noncovidadmitted_none
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/noncovidadmitted/none/report_*.csv
svg: output/models/seqtrialcox/pfizer/noncovidadmitted/none/report_*.svg
png: output/models/seqtrialcox/pfizer/noncovidadmitted/none/report_*.png
model_seqtrialcox_pfizer_covidcc_none:
run: r:latest analysis/model_seqtrialcox.R pfizer covidcc none
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/covidcc/none/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/covidcc/none/model_*.txt
csv: output/models/seqtrialcox/pfizer/covidcc/none/model_*.csv
report_seqtrialcox_pfizer_covidcc_none:
run: r:latest analysis/report_seqtrialcox.R pfizer covidcc none
needs:
- data_selection
- model_seqtrialcox_pfizer_covidcc_none
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/covidcc/none/report_*.csv
svg: output/models/seqtrialcox/pfizer/covidcc/none/report_*.svg
png: output/models/seqtrialcox/pfizer/covidcc/none/report_*.png
model_seqtrialcox_pfizer_coviddeath_none:
run: r:latest analysis/model_seqtrialcox.R pfizer coviddeath none
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/coviddeath/none/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/coviddeath/none/model_*.txt
csv: output/models/seqtrialcox/pfizer/coviddeath/none/model_*.csv
report_seqtrialcox_pfizer_coviddeath_none:
run: r:latest analysis/report_seqtrialcox.R pfizer coviddeath none
needs:
- data_selection
- model_seqtrialcox_pfizer_coviddeath_none
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/coviddeath/none/report_*.csv
svg: output/models/seqtrialcox/pfizer/coviddeath/none/report_*.svg
png: output/models/seqtrialcox/pfizer/coviddeath/none/report_*.png
model_seqtrialcox_pfizer_noncoviddeath_none:
run: r:latest analysis/model_seqtrialcox.R pfizer noncoviddeath none
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/noncoviddeath/none/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/noncoviddeath/none/model_*.txt
csv: output/models/seqtrialcox/pfizer/noncoviddeath/none/model_*.csv
report_seqtrialcox_pfizer_noncoviddeath_none:
run: r:latest analysis/report_seqtrialcox.R pfizer noncoviddeath none
needs:
- data_selection
- model_seqtrialcox_pfizer_noncoviddeath_none
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/noncoviddeath/none/report_*.csv
svg: output/models/seqtrialcox/pfizer/noncoviddeath/none/report_*.svg
png: output/models/seqtrialcox/pfizer/noncoviddeath/none/report_*.png
## ### Models by primary course (''vax12_type'')
model_seqtrialcox_pfizer_postest_vax12_type-az-az:
run: r:latest analysis/model_seqtrialcox.R pfizer postest vax12_type-az-az
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/postest/vax12_type-az-az/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/postest/vax12_type-az-az/model_*.txt
csv: output/models/seqtrialcox/pfizer/postest/vax12_type-az-az/model_*.csv
report_seqtrialcox_pfizer_postest_vax12_type-az-az:
run: r:latest analysis/report_seqtrialcox.R pfizer postest vax12_type-az-az
needs:
- data_selection
- model_seqtrialcox_pfizer_postest_vax12_type-az-az
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/postest/vax12_type-az-az/report_*.csv
svg: output/models/seqtrialcox/pfizer/postest/vax12_type-az-az/report_*.svg
png: output/models/seqtrialcox/pfizer/postest/vax12_type-az-az/report_*.png
model_seqtrialcox_pfizer_postest_vax12_type-pfizer-pfizer:
run: r:latest analysis/model_seqtrialcox.R pfizer postest vax12_type-pfizer-pfizer
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/postest/vax12_type-pfizer-pfizer/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/postest/vax12_type-pfizer-pfizer/model_*.txt
csv: output/models/seqtrialcox/pfizer/postest/vax12_type-pfizer-pfizer/model_*.csv
report_seqtrialcox_pfizer_postest_vax12_type-pfizer-pfizer:
run: r:latest analysis/report_seqtrialcox.R pfizer postest vax12_type-pfizer-pfizer
needs:
- data_selection
- model_seqtrialcox_pfizer_postest_vax12_type-pfizer-pfizer
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/postest/vax12_type-pfizer-pfizer/report_*.csv
svg: output/models/seqtrialcox/pfizer/postest/vax12_type-pfizer-pfizer/report_*.svg
png: output/models/seqtrialcox/pfizer/postest/vax12_type-pfizer-pfizer/report_*.png
model_seqtrialcox_pfizer_covidemergency_vax12_type-az-az:
run: r:latest analysis/model_seqtrialcox.R pfizer covidemergency vax12_type-az-az
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/covidemergency/vax12_type-az-az/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/covidemergency/vax12_type-az-az/model_*.txt
csv: output/models/seqtrialcox/pfizer/covidemergency/vax12_type-az-az/model_*.csv
report_seqtrialcox_pfizer_covidemergency_vax12_type-az-az:
run: r:latest analysis/report_seqtrialcox.R pfizer covidemergency vax12_type-az-az
needs:
- data_selection
- model_seqtrialcox_pfizer_covidemergency_vax12_type-az-az
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/covidemergency/vax12_type-az-az/report_*.csv
svg: output/models/seqtrialcox/pfizer/covidemergency/vax12_type-az-az/report_*.svg
png: output/models/seqtrialcox/pfizer/covidemergency/vax12_type-az-az/report_*.png
model_seqtrialcox_pfizer_covidemergency_vax12_type-pfizer-pfizer:
run: r:latest analysis/model_seqtrialcox.R pfizer covidemergency vax12_type-pfizer-pfizer
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/covidemergency/vax12_type-pfizer-pfizer/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/covidemergency/vax12_type-pfizer-pfizer/model_*.txt
csv: output/models/seqtrialcox/pfizer/covidemergency/vax12_type-pfizer-pfizer/model_*.csv
report_seqtrialcox_pfizer_covidemergency_vax12_type-pfizer-pfizer:
run: r:latest analysis/report_seqtrialcox.R pfizer covidemergency vax12_type-pfizer-pfizer
needs:
- data_selection
- model_seqtrialcox_pfizer_covidemergency_vax12_type-pfizer-pfizer
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/covidemergency/vax12_type-pfizer-pfizer/report_*.csv
svg: output/models/seqtrialcox/pfizer/covidemergency/vax12_type-pfizer-pfizer/report_*.svg
png: output/models/seqtrialcox/pfizer/covidemergency/vax12_type-pfizer-pfizer/report_*.png
model_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-az-az:
run: r:latest analysis/model_seqtrialcox.R pfizer covidadmittedproxy1 vax12_type-az-az
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/covidadmittedproxy1/vax12_type-az-az/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/covidadmittedproxy1/vax12_type-az-az/model_*.txt
csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/vax12_type-az-az/model_*.csv
report_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-az-az:
run: r:latest analysis/report_seqtrialcox.R pfizer covidadmittedproxy1 vax12_type-az-az
needs:
- data_selection
- model_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-az-az
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/vax12_type-az-az/report_*.csv
svg: output/models/seqtrialcox/pfizer/covidadmittedproxy1/vax12_type-az-az/report_*.svg
png: output/models/seqtrialcox/pfizer/covidadmittedproxy1/vax12_type-az-az/report_*.png
model_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-pfizer-pfizer:
run: r:latest analysis/model_seqtrialcox.R pfizer covidadmittedproxy1 vax12_type-pfizer-pfizer
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/covidadmittedproxy1/vax12_type-pfizer-pfizer/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/covidadmittedproxy1/vax12_type-pfizer-pfizer/model_*.txt
csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/vax12_type-pfizer-pfizer/model_*.csv
report_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-pfizer-pfizer:
run: r:latest analysis/report_seqtrialcox.R pfizer covidadmittedproxy1 vax12_type-pfizer-pfizer
needs:
- data_selection
- model_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-pfizer-pfizer
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/vax12_type-pfizer-pfizer/report_*.csv
svg: output/models/seqtrialcox/pfizer/covidadmittedproxy1/vax12_type-pfizer-pfizer/report_*.svg
png: output/models/seqtrialcox/pfizer/covidadmittedproxy1/vax12_type-pfizer-pfizer/report_*.png
model_seqtrialcox_pfizer_covidadmitted_vax12_type-az-az:
run: r:latest analysis/model_seqtrialcox.R pfizer covidadmitted vax12_type-az-az
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/covidadmitted/vax12_type-az-az/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/covidadmitted/vax12_type-az-az/model_*.txt
csv: output/models/seqtrialcox/pfizer/covidadmitted/vax12_type-az-az/model_*.csv
report_seqtrialcox_pfizer_covidadmitted_vax12_type-az-az:
run: r:latest analysis/report_seqtrialcox.R pfizer covidadmitted vax12_type-az-az
needs:
- data_selection
- model_seqtrialcox_pfizer_covidadmitted_vax12_type-az-az
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/covidadmitted/vax12_type-az-az/report_*.csv
svg: output/models/seqtrialcox/pfizer/covidadmitted/vax12_type-az-az/report_*.svg
png: output/models/seqtrialcox/pfizer/covidadmitted/vax12_type-az-az/report_*.png
model_seqtrialcox_pfizer_covidadmitted_vax12_type-pfizer-pfizer:
run: r:latest analysis/model_seqtrialcox.R pfizer covidadmitted vax12_type-pfizer-pfizer
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/covidadmitted/vax12_type-pfizer-pfizer/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/covidadmitted/vax12_type-pfizer-pfizer/model_*.txt
csv: output/models/seqtrialcox/pfizer/covidadmitted/vax12_type-pfizer-pfizer/model_*.csv
report_seqtrialcox_pfizer_covidadmitted_vax12_type-pfizer-pfizer:
run: r:latest analysis/report_seqtrialcox.R pfizer covidadmitted vax12_type-pfizer-pfizer
needs:
- data_selection
- model_seqtrialcox_pfizer_covidadmitted_vax12_type-pfizer-pfizer
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/covidadmitted/vax12_type-pfizer-pfizer/report_*.csv
svg: output/models/seqtrialcox/pfizer/covidadmitted/vax12_type-pfizer-pfizer/report_*.svg
png: output/models/seqtrialcox/pfizer/covidadmitted/vax12_type-pfizer-pfizer/report_*.png
model_seqtrialcox_pfizer_noncovidadmitted_vax12_type-az-az:
run: r:latest analysis/model_seqtrialcox.R pfizer noncovidadmitted vax12_type-az-az
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/noncovidadmitted/vax12_type-az-az/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/noncovidadmitted/vax12_type-az-az/model_*.txt
csv: output/models/seqtrialcox/pfizer/noncovidadmitted/vax12_type-az-az/model_*.csv
report_seqtrialcox_pfizer_noncovidadmitted_vax12_type-az-az:
run: r:latest analysis/report_seqtrialcox.R pfizer noncovidadmitted vax12_type-az-az
needs:
- data_selection
- model_seqtrialcox_pfizer_noncovidadmitted_vax12_type-az-az
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/noncovidadmitted/vax12_type-az-az/report_*.csv
svg: output/models/seqtrialcox/pfizer/noncovidadmitted/vax12_type-az-az/report_*.svg
png: output/models/seqtrialcox/pfizer/noncovidadmitted/vax12_type-az-az/report_*.png
model_seqtrialcox_pfizer_noncovidadmitted_vax12_type-pfizer-pfizer:
run: r:latest analysis/model_seqtrialcox.R pfizer noncovidadmitted vax12_type-pfizer-pfizer
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/noncovidadmitted/vax12_type-pfizer-pfizer/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/noncovidadmitted/vax12_type-pfizer-pfizer/model_*.txt
csv: output/models/seqtrialcox/pfizer/noncovidadmitted/vax12_type-pfizer-pfizer/model_*.csv
report_seqtrialcox_pfizer_noncovidadmitted_vax12_type-pfizer-pfizer:
run: r:latest analysis/report_seqtrialcox.R pfizer noncovidadmitted vax12_type-pfizer-pfizer
needs:
- data_selection
- model_seqtrialcox_pfizer_noncovidadmitted_vax12_type-pfizer-pfizer
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/noncovidadmitted/vax12_type-pfizer-pfizer/report_*.csv
svg: output/models/seqtrialcox/pfizer/noncovidadmitted/vax12_type-pfizer-pfizer/report_*.svg
png: output/models/seqtrialcox/pfizer/noncovidadmitted/vax12_type-pfizer-pfizer/report_*.png
model_seqtrialcox_pfizer_covidcc_vax12_type-az-az:
run: r:latest analysis/model_seqtrialcox.R pfizer covidcc vax12_type-az-az
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/covidcc/vax12_type-az-az/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/covidcc/vax12_type-az-az/model_*.txt
csv: output/models/seqtrialcox/pfizer/covidcc/vax12_type-az-az/model_*.csv
report_seqtrialcox_pfizer_covidcc_vax12_type-az-az:
run: r:latest analysis/report_seqtrialcox.R pfizer covidcc vax12_type-az-az
needs:
- data_selection
- model_seqtrialcox_pfizer_covidcc_vax12_type-az-az
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/covidcc/vax12_type-az-az/report_*.csv
svg: output/models/seqtrialcox/pfizer/covidcc/vax12_type-az-az/report_*.svg
png: output/models/seqtrialcox/pfizer/covidcc/vax12_type-az-az/report_*.png
model_seqtrialcox_pfizer_covidcc_vax12_type-pfizer-pfizer:
run: r:latest analysis/model_seqtrialcox.R pfizer covidcc vax12_type-pfizer-pfizer
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/covidcc/vax12_type-pfizer-pfizer/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/covidcc/vax12_type-pfizer-pfizer/model_*.txt
csv: output/models/seqtrialcox/pfizer/covidcc/vax12_type-pfizer-pfizer/model_*.csv
report_seqtrialcox_pfizer_covidcc_vax12_type-pfizer-pfizer:
run: r:latest analysis/report_seqtrialcox.R pfizer covidcc vax12_type-pfizer-pfizer
needs:
- data_selection
- model_seqtrialcox_pfizer_covidcc_vax12_type-pfizer-pfizer
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/covidcc/vax12_type-pfizer-pfizer/report_*.csv
svg: output/models/seqtrialcox/pfizer/covidcc/vax12_type-pfizer-pfizer/report_*.svg
png: output/models/seqtrialcox/pfizer/covidcc/vax12_type-pfizer-pfizer/report_*.png
model_seqtrialcox_pfizer_coviddeath_vax12_type-az-az:
run: r:latest analysis/model_seqtrialcox.R pfizer coviddeath vax12_type-az-az
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/coviddeath/vax12_type-az-az/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/coviddeath/vax12_type-az-az/model_*.txt
csv: output/models/seqtrialcox/pfizer/coviddeath/vax12_type-az-az/model_*.csv
report_seqtrialcox_pfizer_coviddeath_vax12_type-az-az:
run: r:latest analysis/report_seqtrialcox.R pfizer coviddeath vax12_type-az-az
needs:
- data_selection
- model_seqtrialcox_pfizer_coviddeath_vax12_type-az-az
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/coviddeath/vax12_type-az-az/report_*.csv
svg: output/models/seqtrialcox/pfizer/coviddeath/vax12_type-az-az/report_*.svg
png: output/models/seqtrialcox/pfizer/coviddeath/vax12_type-az-az/report_*.png
model_seqtrialcox_pfizer_coviddeath_vax12_type-pfizer-pfizer:
run: r:latest analysis/model_seqtrialcox.R pfizer coviddeath vax12_type-pfizer-pfizer
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/coviddeath/vax12_type-pfizer-pfizer/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/coviddeath/vax12_type-pfizer-pfizer/model_*.txt
csv: output/models/seqtrialcox/pfizer/coviddeath/vax12_type-pfizer-pfizer/model_*.csv
report_seqtrialcox_pfizer_coviddeath_vax12_type-pfizer-pfizer:
run: r:latest analysis/report_seqtrialcox.R pfizer coviddeath vax12_type-pfizer-pfizer
needs:
- data_selection
- model_seqtrialcox_pfizer_coviddeath_vax12_type-pfizer-pfizer
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/coviddeath/vax12_type-pfizer-pfizer/report_*.csv
svg: output/models/seqtrialcox/pfizer/coviddeath/vax12_type-pfizer-pfizer/report_*.svg
png: output/models/seqtrialcox/pfizer/coviddeath/vax12_type-pfizer-pfizer/report_*.png
model_seqtrialcox_pfizer_noncoviddeath_vax12_type-az-az:
run: r:latest analysis/model_seqtrialcox.R pfizer noncoviddeath vax12_type-az-az
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/noncoviddeath/vax12_type-az-az/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/noncoviddeath/vax12_type-az-az/model_*.txt
csv: output/models/seqtrialcox/pfizer/noncoviddeath/vax12_type-az-az/model_*.csv
report_seqtrialcox_pfizer_noncoviddeath_vax12_type-az-az:
run: r:latest analysis/report_seqtrialcox.R pfizer noncoviddeath vax12_type-az-az
needs:
- data_selection
- model_seqtrialcox_pfizer_noncoviddeath_vax12_type-az-az
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/noncoviddeath/vax12_type-az-az/report_*.csv
svg: output/models/seqtrialcox/pfizer/noncoviddeath/vax12_type-az-az/report_*.svg
png: output/models/seqtrialcox/pfizer/noncoviddeath/vax12_type-az-az/report_*.png
model_seqtrialcox_pfizer_noncoviddeath_vax12_type-pfizer-pfizer:
run: r:latest analysis/model_seqtrialcox.R pfizer noncoviddeath vax12_type-pfizer-pfizer
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/noncoviddeath/vax12_type-pfizer-pfizer/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/noncoviddeath/vax12_type-pfizer-pfizer/model_*.txt
csv: output/models/seqtrialcox/pfizer/noncoviddeath/vax12_type-pfizer-pfizer/model_*.csv
report_seqtrialcox_pfizer_noncoviddeath_vax12_type-pfizer-pfizer:
run: r:latest analysis/report_seqtrialcox.R pfizer noncoviddeath vax12_type-pfizer-pfizer
needs:
- data_selection
- model_seqtrialcox_pfizer_noncoviddeath_vax12_type-pfizer-pfizer
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/noncoviddeath/vax12_type-pfizer-pfizer/report_*.csv
svg: output/models/seqtrialcox/pfizer/noncoviddeath/vax12_type-pfizer-pfizer/report_*.svg
png: output/models/seqtrialcox/pfizer/noncoviddeath/vax12_type-pfizer-pfizer/report_*.png
## ### Models by clinical extremely vulnerable (''cev'')
model_seqtrialcox_pfizer_postest_cev-FALSE:
run: r:latest analysis/model_seqtrialcox.R pfizer postest cev-FALSE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/postest/cev-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/postest/cev-FALSE/model_*.txt
csv: output/models/seqtrialcox/pfizer/postest/cev-FALSE/model_*.csv
report_seqtrialcox_pfizer_postest_cev-FALSE:
run: r:latest analysis/report_seqtrialcox.R pfizer postest cev-FALSE
needs:
- data_selection
- model_seqtrialcox_pfizer_postest_cev-FALSE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/postest/cev-FALSE/report_*.csv
svg: output/models/seqtrialcox/pfizer/postest/cev-FALSE/report_*.svg
png: output/models/seqtrialcox/pfizer/postest/cev-FALSE/report_*.png
model_seqtrialcox_pfizer_postest_cev-TRUE:
run: r:latest analysis/model_seqtrialcox.R pfizer postest cev-TRUE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/postest/cev-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/postest/cev-TRUE/model_*.txt
csv: output/models/seqtrialcox/pfizer/postest/cev-TRUE/model_*.csv
report_seqtrialcox_pfizer_postest_cev-TRUE:
run: r:latest analysis/report_seqtrialcox.R pfizer postest cev-TRUE
needs:
- data_selection
- model_seqtrialcox_pfizer_postest_cev-TRUE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/postest/cev-TRUE/report_*.csv
svg: output/models/seqtrialcox/pfizer/postest/cev-TRUE/report_*.svg
png: output/models/seqtrialcox/pfizer/postest/cev-TRUE/report_*.png
model_seqtrialcox_pfizer_covidemergency_cev-FALSE:
run: r:latest analysis/model_seqtrialcox.R pfizer covidemergency cev-FALSE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/covidemergency/cev-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/covidemergency/cev-FALSE/model_*.txt
csv: output/models/seqtrialcox/pfizer/covidemergency/cev-FALSE/model_*.csv
report_seqtrialcox_pfizer_covidemergency_cev-FALSE:
run: r:latest analysis/report_seqtrialcox.R pfizer covidemergency cev-FALSE
needs:
- data_selection
- model_seqtrialcox_pfizer_covidemergency_cev-FALSE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/covidemergency/cev-FALSE/report_*.csv
svg: output/models/seqtrialcox/pfizer/covidemergency/cev-FALSE/report_*.svg
png: output/models/seqtrialcox/pfizer/covidemergency/cev-FALSE/report_*.png
model_seqtrialcox_pfizer_covidemergency_cev-TRUE:
run: r:latest analysis/model_seqtrialcox.R pfizer covidemergency cev-TRUE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/covidemergency/cev-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/covidemergency/cev-TRUE/model_*.txt
csv: output/models/seqtrialcox/pfizer/covidemergency/cev-TRUE/model_*.csv
report_seqtrialcox_pfizer_covidemergency_cev-TRUE:
run: r:latest analysis/report_seqtrialcox.R pfizer covidemergency cev-TRUE
needs:
- data_selection
- model_seqtrialcox_pfizer_covidemergency_cev-TRUE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/covidemergency/cev-TRUE/report_*.csv
svg: output/models/seqtrialcox/pfizer/covidemergency/cev-TRUE/report_*.svg
png: output/models/seqtrialcox/pfizer/covidemergency/cev-TRUE/report_*.png
model_seqtrialcox_pfizer_covidadmittedproxy1_cev-FALSE:
run: r:latest analysis/model_seqtrialcox.R pfizer covidadmittedproxy1 cev-FALSE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/covidadmittedproxy1/cev-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/covidadmittedproxy1/cev-FALSE/model_*.txt
csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/cev-FALSE/model_*.csv
report_seqtrialcox_pfizer_covidadmittedproxy1_cev-FALSE:
run: r:latest analysis/report_seqtrialcox.R pfizer covidadmittedproxy1 cev-FALSE
needs:
- data_selection
- model_seqtrialcox_pfizer_covidadmittedproxy1_cev-FALSE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/cev-FALSE/report_*.csv
svg: output/models/seqtrialcox/pfizer/covidadmittedproxy1/cev-FALSE/report_*.svg
png: output/models/seqtrialcox/pfizer/covidadmittedproxy1/cev-FALSE/report_*.png
model_seqtrialcox_pfizer_covidadmittedproxy1_cev-TRUE:
run: r:latest analysis/model_seqtrialcox.R pfizer covidadmittedproxy1 cev-TRUE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/covidadmittedproxy1/cev-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/covidadmittedproxy1/cev-TRUE/model_*.txt
csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/cev-TRUE/model_*.csv
report_seqtrialcox_pfizer_covidadmittedproxy1_cev-TRUE:
run: r:latest analysis/report_seqtrialcox.R pfizer covidadmittedproxy1 cev-TRUE
needs:
- data_selection
- model_seqtrialcox_pfizer_covidadmittedproxy1_cev-TRUE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/cev-TRUE/report_*.csv
svg: output/models/seqtrialcox/pfizer/covidadmittedproxy1/cev-TRUE/report_*.svg
png: output/models/seqtrialcox/pfizer/covidadmittedproxy1/cev-TRUE/report_*.png
model_seqtrialcox_pfizer_covidadmitted_cev-FALSE:
run: r:latest analysis/model_seqtrialcox.R pfizer covidadmitted cev-FALSE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/covidadmitted/cev-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/covidadmitted/cev-FALSE/model_*.txt
csv: output/models/seqtrialcox/pfizer/covidadmitted/cev-FALSE/model_*.csv
report_seqtrialcox_pfizer_covidadmitted_cev-FALSE:
run: r:latest analysis/report_seqtrialcox.R pfizer covidadmitted cev-FALSE
needs:
- data_selection
- model_seqtrialcox_pfizer_covidadmitted_cev-FALSE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/covidadmitted/cev-FALSE/report_*.csv
svg: output/models/seqtrialcox/pfizer/covidadmitted/cev-FALSE/report_*.svg
png: output/models/seqtrialcox/pfizer/covidadmitted/cev-FALSE/report_*.png
model_seqtrialcox_pfizer_covidadmitted_cev-TRUE:
run: r:latest analysis/model_seqtrialcox.R pfizer covidadmitted cev-TRUE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/covidadmitted/cev-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/covidadmitted/cev-TRUE/model_*.txt
csv: output/models/seqtrialcox/pfizer/covidadmitted/cev-TRUE/model_*.csv
report_seqtrialcox_pfizer_covidadmitted_cev-TRUE:
run: r:latest analysis/report_seqtrialcox.R pfizer covidadmitted cev-TRUE
needs:
- data_selection
- model_seqtrialcox_pfizer_covidadmitted_cev-TRUE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/covidadmitted/cev-TRUE/report_*.csv
svg: output/models/seqtrialcox/pfizer/covidadmitted/cev-TRUE/report_*.svg
png: output/models/seqtrialcox/pfizer/covidadmitted/cev-TRUE/report_*.png
model_seqtrialcox_pfizer_noncovidadmitted_cev-FALSE:
run: r:latest analysis/model_seqtrialcox.R pfizer noncovidadmitted cev-FALSE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/noncovidadmitted/cev-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/noncovidadmitted/cev-FALSE/model_*.txt
csv: output/models/seqtrialcox/pfizer/noncovidadmitted/cev-FALSE/model_*.csv
report_seqtrialcox_pfizer_noncovidadmitted_cev-FALSE:
run: r:latest analysis/report_seqtrialcox.R pfizer noncovidadmitted cev-FALSE
needs:
- data_selection
- model_seqtrialcox_pfizer_noncovidadmitted_cev-FALSE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/noncovidadmitted/cev-FALSE/report_*.csv
svg: output/models/seqtrialcox/pfizer/noncovidadmitted/cev-FALSE/report_*.svg
png: output/models/seqtrialcox/pfizer/noncovidadmitted/cev-FALSE/report_*.png
model_seqtrialcox_pfizer_noncovidadmitted_cev-TRUE:
run: r:latest analysis/model_seqtrialcox.R pfizer noncovidadmitted cev-TRUE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/noncovidadmitted/cev-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/noncovidadmitted/cev-TRUE/model_*.txt
csv: output/models/seqtrialcox/pfizer/noncovidadmitted/cev-TRUE/model_*.csv
report_seqtrialcox_pfizer_noncovidadmitted_cev-TRUE:
run: r:latest analysis/report_seqtrialcox.R pfizer noncovidadmitted cev-TRUE
needs:
- data_selection
- model_seqtrialcox_pfizer_noncovidadmitted_cev-TRUE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/noncovidadmitted/cev-TRUE/report_*.csv
svg: output/models/seqtrialcox/pfizer/noncovidadmitted/cev-TRUE/report_*.svg
png: output/models/seqtrialcox/pfizer/noncovidadmitted/cev-TRUE/report_*.png
model_seqtrialcox_pfizer_covidcc_cev-FALSE:
run: r:latest analysis/model_seqtrialcox.R pfizer covidcc cev-FALSE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/covidcc/cev-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/covidcc/cev-FALSE/model_*.txt
csv: output/models/seqtrialcox/pfizer/covidcc/cev-FALSE/model_*.csv
report_seqtrialcox_pfizer_covidcc_cev-FALSE:
run: r:latest analysis/report_seqtrialcox.R pfizer covidcc cev-FALSE
needs:
- data_selection
- model_seqtrialcox_pfizer_covidcc_cev-FALSE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/covidcc/cev-FALSE/report_*.csv
svg: output/models/seqtrialcox/pfizer/covidcc/cev-FALSE/report_*.svg
png: output/models/seqtrialcox/pfizer/covidcc/cev-FALSE/report_*.png
model_seqtrialcox_pfizer_covidcc_cev-TRUE:
run: r:latest analysis/model_seqtrialcox.R pfizer covidcc cev-TRUE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/covidcc/cev-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/covidcc/cev-TRUE/model_*.txt
csv: output/models/seqtrialcox/pfizer/covidcc/cev-TRUE/model_*.csv
report_seqtrialcox_pfizer_covidcc_cev-TRUE:
run: r:latest analysis/report_seqtrialcox.R pfizer covidcc cev-TRUE
needs:
- data_selection
- model_seqtrialcox_pfizer_covidcc_cev-TRUE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/covidcc/cev-TRUE/report_*.csv
svg: output/models/seqtrialcox/pfizer/covidcc/cev-TRUE/report_*.svg
png: output/models/seqtrialcox/pfizer/covidcc/cev-TRUE/report_*.png
model_seqtrialcox_pfizer_coviddeath_cev-FALSE:
run: r:latest analysis/model_seqtrialcox.R pfizer coviddeath cev-FALSE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/coviddeath/cev-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/coviddeath/cev-FALSE/model_*.txt
csv: output/models/seqtrialcox/pfizer/coviddeath/cev-FALSE/model_*.csv
report_seqtrialcox_pfizer_coviddeath_cev-FALSE:
run: r:latest analysis/report_seqtrialcox.R pfizer coviddeath cev-FALSE
needs:
- data_selection
- model_seqtrialcox_pfizer_coviddeath_cev-FALSE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/coviddeath/cev-FALSE/report_*.csv
svg: output/models/seqtrialcox/pfizer/coviddeath/cev-FALSE/report_*.svg
png: output/models/seqtrialcox/pfizer/coviddeath/cev-FALSE/report_*.png
model_seqtrialcox_pfizer_coviddeath_cev-TRUE:
run: r:latest analysis/model_seqtrialcox.R pfizer coviddeath cev-TRUE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/coviddeath/cev-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/coviddeath/cev-TRUE/model_*.txt
csv: output/models/seqtrialcox/pfizer/coviddeath/cev-TRUE/model_*.csv
report_seqtrialcox_pfizer_coviddeath_cev-TRUE:
run: r:latest analysis/report_seqtrialcox.R pfizer coviddeath cev-TRUE
needs:
- data_selection
- model_seqtrialcox_pfizer_coviddeath_cev-TRUE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/coviddeath/cev-TRUE/report_*.csv
svg: output/models/seqtrialcox/pfizer/coviddeath/cev-TRUE/report_*.svg
png: output/models/seqtrialcox/pfizer/coviddeath/cev-TRUE/report_*.png
model_seqtrialcox_pfizer_noncoviddeath_cev-FALSE:
run: r:latest analysis/model_seqtrialcox.R pfizer noncoviddeath cev-FALSE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/noncoviddeath/cev-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/noncoviddeath/cev-FALSE/model_*.txt
csv: output/models/seqtrialcox/pfizer/noncoviddeath/cev-FALSE/model_*.csv
report_seqtrialcox_pfizer_noncoviddeath_cev-FALSE:
run: r:latest analysis/report_seqtrialcox.R pfizer noncoviddeath cev-FALSE
needs:
- data_selection
- model_seqtrialcox_pfizer_noncoviddeath_cev-FALSE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/noncoviddeath/cev-FALSE/report_*.csv
svg: output/models/seqtrialcox/pfizer/noncoviddeath/cev-FALSE/report_*.svg
png: output/models/seqtrialcox/pfizer/noncoviddeath/cev-FALSE/report_*.png
model_seqtrialcox_pfizer_noncoviddeath_cev-TRUE:
run: r:latest analysis/model_seqtrialcox.R pfizer noncoviddeath cev-TRUE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/noncoviddeath/cev-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/noncoviddeath/cev-TRUE/model_*.txt
csv: output/models/seqtrialcox/pfizer/noncoviddeath/cev-TRUE/model_*.csv
report_seqtrialcox_pfizer_noncoviddeath_cev-TRUE:
run: r:latest analysis/report_seqtrialcox.R pfizer noncoviddeath cev-TRUE
needs:
- data_selection
- model_seqtrialcox_pfizer_noncoviddeath_cev-TRUE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/noncoviddeath/cev-TRUE/report_*.csv
svg: output/models/seqtrialcox/pfizer/noncoviddeath/cev-TRUE/report_*.svg
png: output/models/seqtrialcox/pfizer/noncoviddeath/cev-TRUE/report_*.png
## ### Models by prior infection (''prior_covid_infection'')
model_seqtrialcox_pfizer_postest_prior_covid_infection-FALSE:
run: r:latest analysis/model_seqtrialcox.R pfizer postest prior_covid_infection-FALSE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/postest/prior_covid_infection-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/postest/prior_covid_infection-FALSE/model_*.txt
csv: output/models/seqtrialcox/pfizer/postest/prior_covid_infection-FALSE/model_*.csv
report_seqtrialcox_pfizer_postest_prior_covid_infection-FALSE:
run: r:latest analysis/report_seqtrialcox.R pfizer postest prior_covid_infection-FALSE
needs:
- data_selection
- model_seqtrialcox_pfizer_postest_prior_covid_infection-FALSE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/postest/prior_covid_infection-FALSE/report_*.csv
svg: output/models/seqtrialcox/pfizer/postest/prior_covid_infection-FALSE/report_*.svg
png: output/models/seqtrialcox/pfizer/postest/prior_covid_infection-FALSE/report_*.png
model_seqtrialcox_pfizer_postest_prior_covid_infection-TRUE:
run: r:latest analysis/model_seqtrialcox.R pfizer postest prior_covid_infection-TRUE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/postest/prior_covid_infection-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/postest/prior_covid_infection-TRUE/model_*.txt
csv: output/models/seqtrialcox/pfizer/postest/prior_covid_infection-TRUE/model_*.csv
report_seqtrialcox_pfizer_postest_prior_covid_infection-TRUE:
run: r:latest analysis/report_seqtrialcox.R pfizer postest prior_covid_infection-TRUE
needs:
- data_selection
- model_seqtrialcox_pfizer_postest_prior_covid_infection-TRUE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/postest/prior_covid_infection-TRUE/report_*.csv
svg: output/models/seqtrialcox/pfizer/postest/prior_covid_infection-TRUE/report_*.svg
png: output/models/seqtrialcox/pfizer/postest/prior_covid_infection-TRUE/report_*.png
model_seqtrialcox_pfizer_covidemergency_prior_covid_infection-FALSE:
run: r:latest analysis/model_seqtrialcox.R pfizer covidemergency prior_covid_infection-FALSE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/covidemergency/prior_covid_infection-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/covidemergency/prior_covid_infection-FALSE/model_*.txt
csv: output/models/seqtrialcox/pfizer/covidemergency/prior_covid_infection-FALSE/model_*.csv
report_seqtrialcox_pfizer_covidemergency_prior_covid_infection-FALSE:
run: r:latest analysis/report_seqtrialcox.R pfizer covidemergency prior_covid_infection-FALSE
needs:
- data_selection
- model_seqtrialcox_pfizer_covidemergency_prior_covid_infection-FALSE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/covidemergency/prior_covid_infection-FALSE/report_*.csv
svg: output/models/seqtrialcox/pfizer/covidemergency/prior_covid_infection-FALSE/report_*.svg
png: output/models/seqtrialcox/pfizer/covidemergency/prior_covid_infection-FALSE/report_*.png
model_seqtrialcox_pfizer_covidemergency_prior_covid_infection-TRUE:
run: r:latest analysis/model_seqtrialcox.R pfizer covidemergency prior_covid_infection-TRUE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/covidemergency/prior_covid_infection-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/covidemergency/prior_covid_infection-TRUE/model_*.txt
csv: output/models/seqtrialcox/pfizer/covidemergency/prior_covid_infection-TRUE/model_*.csv
report_seqtrialcox_pfizer_covidemergency_prior_covid_infection-TRUE:
run: r:latest analysis/report_seqtrialcox.R pfizer covidemergency prior_covid_infection-TRUE
needs:
- data_selection
- model_seqtrialcox_pfizer_covidemergency_prior_covid_infection-TRUE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/covidemergency/prior_covid_infection-TRUE/report_*.csv
svg: output/models/seqtrialcox/pfizer/covidemergency/prior_covid_infection-TRUE/report_*.svg
png: output/models/seqtrialcox/pfizer/covidemergency/prior_covid_infection-TRUE/report_*.png
model_seqtrialcox_pfizer_covidadmittedproxy1_prior_covid_infection-FALSE:
run: r:latest analysis/model_seqtrialcox.R pfizer covidadmittedproxy1 prior_covid_infection-FALSE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/covidadmittedproxy1/prior_covid_infection-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/covidadmittedproxy1/prior_covid_infection-FALSE/model_*.txt
csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/prior_covid_infection-FALSE/model_*.csv
report_seqtrialcox_pfizer_covidadmittedproxy1_prior_covid_infection-FALSE:
run: r:latest analysis/report_seqtrialcox.R pfizer covidadmittedproxy1 prior_covid_infection-FALSE
needs:
- data_selection
- model_seqtrialcox_pfizer_covidadmittedproxy1_prior_covid_infection-FALSE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/prior_covid_infection-FALSE/report_*.csv
svg: output/models/seqtrialcox/pfizer/covidadmittedproxy1/prior_covid_infection-FALSE/report_*.svg
png: output/models/seqtrialcox/pfizer/covidadmittedproxy1/prior_covid_infection-FALSE/report_*.png
model_seqtrialcox_pfizer_covidadmittedproxy1_prior_covid_infection-TRUE:
run: r:latest analysis/model_seqtrialcox.R pfizer covidadmittedproxy1 prior_covid_infection-TRUE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/covidadmittedproxy1/prior_covid_infection-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/covidadmittedproxy1/prior_covid_infection-TRUE/model_*.txt
csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/prior_covid_infection-TRUE/model_*.csv
report_seqtrialcox_pfizer_covidadmittedproxy1_prior_covid_infection-TRUE:
run: r:latest analysis/report_seqtrialcox.R pfizer covidadmittedproxy1 prior_covid_infection-TRUE
needs:
- data_selection
- model_seqtrialcox_pfizer_covidadmittedproxy1_prior_covid_infection-TRUE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/prior_covid_infection-TRUE/report_*.csv
svg: output/models/seqtrialcox/pfizer/covidadmittedproxy1/prior_covid_infection-TRUE/report_*.svg
png: output/models/seqtrialcox/pfizer/covidadmittedproxy1/prior_covid_infection-TRUE/report_*.png
model_seqtrialcox_pfizer_covidadmitted_prior_covid_infection-FALSE:
run: r:latest analysis/model_seqtrialcox.R pfizer covidadmitted prior_covid_infection-FALSE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/covidadmitted/prior_covid_infection-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/covidadmitted/prior_covid_infection-FALSE/model_*.txt
csv: output/models/seqtrialcox/pfizer/covidadmitted/prior_covid_infection-FALSE/model_*.csv
report_seqtrialcox_pfizer_covidadmitted_prior_covid_infection-FALSE:
run: r:latest analysis/report_seqtrialcox.R pfizer covidadmitted prior_covid_infection-FALSE
needs:
- data_selection
- model_seqtrialcox_pfizer_covidadmitted_prior_covid_infection-FALSE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/covidadmitted/prior_covid_infection-FALSE/report_*.csv
svg: output/models/seqtrialcox/pfizer/covidadmitted/prior_covid_infection-FALSE/report_*.svg
png: output/models/seqtrialcox/pfizer/covidadmitted/prior_covid_infection-FALSE/report_*.png
model_seqtrialcox_pfizer_covidadmitted_prior_covid_infection-TRUE:
run: r:latest analysis/model_seqtrialcox.R pfizer covidadmitted prior_covid_infection-TRUE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/covidadmitted/prior_covid_infection-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/covidadmitted/prior_covid_infection-TRUE/model_*.txt
csv: output/models/seqtrialcox/pfizer/covidadmitted/prior_covid_infection-TRUE/model_*.csv
report_seqtrialcox_pfizer_covidadmitted_prior_covid_infection-TRUE:
run: r:latest analysis/report_seqtrialcox.R pfizer covidadmitted prior_covid_infection-TRUE
needs:
- data_selection
- model_seqtrialcox_pfizer_covidadmitted_prior_covid_infection-TRUE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/covidadmitted/prior_covid_infection-TRUE/report_*.csv
svg: output/models/seqtrialcox/pfizer/covidadmitted/prior_covid_infection-TRUE/report_*.svg
png: output/models/seqtrialcox/pfizer/covidadmitted/prior_covid_infection-TRUE/report_*.png
model_seqtrialcox_pfizer_noncovidadmitted_prior_covid_infection-FALSE:
run: r:latest analysis/model_seqtrialcox.R pfizer noncovidadmitted prior_covid_infection-FALSE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/noncovidadmitted/prior_covid_infection-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/noncovidadmitted/prior_covid_infection-FALSE/model_*.txt
csv: output/models/seqtrialcox/pfizer/noncovidadmitted/prior_covid_infection-FALSE/model_*.csv
report_seqtrialcox_pfizer_noncovidadmitted_prior_covid_infection-FALSE:
run: r:latest analysis/report_seqtrialcox.R pfizer noncovidadmitted prior_covid_infection-FALSE
needs:
- data_selection
- model_seqtrialcox_pfizer_noncovidadmitted_prior_covid_infection-FALSE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/noncovidadmitted/prior_covid_infection-FALSE/report_*.csv
svg: output/models/seqtrialcox/pfizer/noncovidadmitted/prior_covid_infection-FALSE/report_*.svg
png: output/models/seqtrialcox/pfizer/noncovidadmitted/prior_covid_infection-FALSE/report_*.png
model_seqtrialcox_pfizer_noncovidadmitted_prior_covid_infection-TRUE:
run: r:latest analysis/model_seqtrialcox.R pfizer noncovidadmitted prior_covid_infection-TRUE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/noncovidadmitted/prior_covid_infection-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/noncovidadmitted/prior_covid_infection-TRUE/model_*.txt
csv: output/models/seqtrialcox/pfizer/noncovidadmitted/prior_covid_infection-TRUE/model_*.csv
report_seqtrialcox_pfizer_noncovidadmitted_prior_covid_infection-TRUE:
run: r:latest analysis/report_seqtrialcox.R pfizer noncovidadmitted prior_covid_infection-TRUE
needs:
- data_selection
- model_seqtrialcox_pfizer_noncovidadmitted_prior_covid_infection-TRUE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/noncovidadmitted/prior_covid_infection-TRUE/report_*.csv
svg: output/models/seqtrialcox/pfizer/noncovidadmitted/prior_covid_infection-TRUE/report_*.svg
png: output/models/seqtrialcox/pfizer/noncovidadmitted/prior_covid_infection-TRUE/report_*.png
model_seqtrialcox_pfizer_covidcc_prior_covid_infection-FALSE:
run: r:latest analysis/model_seqtrialcox.R pfizer covidcc prior_covid_infection-FALSE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/covidcc/prior_covid_infection-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/covidcc/prior_covid_infection-FALSE/model_*.txt
csv: output/models/seqtrialcox/pfizer/covidcc/prior_covid_infection-FALSE/model_*.csv
report_seqtrialcox_pfizer_covidcc_prior_covid_infection-FALSE:
run: r:latest analysis/report_seqtrialcox.R pfizer covidcc prior_covid_infection-FALSE
needs:
- data_selection
- model_seqtrialcox_pfizer_covidcc_prior_covid_infection-FALSE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/covidcc/prior_covid_infection-FALSE/report_*.csv
svg: output/models/seqtrialcox/pfizer/covidcc/prior_covid_infection-FALSE/report_*.svg
png: output/models/seqtrialcox/pfizer/covidcc/prior_covid_infection-FALSE/report_*.png
model_seqtrialcox_pfizer_covidcc_prior_covid_infection-TRUE:
run: r:latest analysis/model_seqtrialcox.R pfizer covidcc prior_covid_infection-TRUE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/covidcc/prior_covid_infection-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/covidcc/prior_covid_infection-TRUE/model_*.txt
csv: output/models/seqtrialcox/pfizer/covidcc/prior_covid_infection-TRUE/model_*.csv
report_seqtrialcox_pfizer_covidcc_prior_covid_infection-TRUE:
run: r:latest analysis/report_seqtrialcox.R pfizer covidcc prior_covid_infection-TRUE
needs:
- data_selection
- model_seqtrialcox_pfizer_covidcc_prior_covid_infection-TRUE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/covidcc/prior_covid_infection-TRUE/report_*.csv
svg: output/models/seqtrialcox/pfizer/covidcc/prior_covid_infection-TRUE/report_*.svg
png: output/models/seqtrialcox/pfizer/covidcc/prior_covid_infection-TRUE/report_*.png
model_seqtrialcox_pfizer_coviddeath_prior_covid_infection-FALSE:
run: r:latest analysis/model_seqtrialcox.R pfizer coviddeath prior_covid_infection-FALSE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/coviddeath/prior_covid_infection-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/coviddeath/prior_covid_infection-FALSE/model_*.txt
csv: output/models/seqtrialcox/pfizer/coviddeath/prior_covid_infection-FALSE/model_*.csv
report_seqtrialcox_pfizer_coviddeath_prior_covid_infection-FALSE:
run: r:latest analysis/report_seqtrialcox.R pfizer coviddeath prior_covid_infection-FALSE
needs:
- data_selection
- model_seqtrialcox_pfizer_coviddeath_prior_covid_infection-FALSE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/coviddeath/prior_covid_infection-FALSE/report_*.csv
svg: output/models/seqtrialcox/pfizer/coviddeath/prior_covid_infection-FALSE/report_*.svg
png: output/models/seqtrialcox/pfizer/coviddeath/prior_covid_infection-FALSE/report_*.png
model_seqtrialcox_pfizer_coviddeath_prior_covid_infection-TRUE:
run: r:latest analysis/model_seqtrialcox.R pfizer coviddeath prior_covid_infection-TRUE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/coviddeath/prior_covid_infection-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/coviddeath/prior_covid_infection-TRUE/model_*.txt
csv: output/models/seqtrialcox/pfizer/coviddeath/prior_covid_infection-TRUE/model_*.csv
report_seqtrialcox_pfizer_coviddeath_prior_covid_infection-TRUE:
run: r:latest analysis/report_seqtrialcox.R pfizer coviddeath prior_covid_infection-TRUE
needs:
- data_selection
- model_seqtrialcox_pfizer_coviddeath_prior_covid_infection-TRUE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/coviddeath/prior_covid_infection-TRUE/report_*.csv
svg: output/models/seqtrialcox/pfizer/coviddeath/prior_covid_infection-TRUE/report_*.svg
png: output/models/seqtrialcox/pfizer/coviddeath/prior_covid_infection-TRUE/report_*.png
model_seqtrialcox_pfizer_noncoviddeath_prior_covid_infection-FALSE:
run: r:latest analysis/model_seqtrialcox.R pfizer noncoviddeath prior_covid_infection-FALSE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/noncoviddeath/prior_covid_infection-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/noncoviddeath/prior_covid_infection-FALSE/model_*.txt
csv: output/models/seqtrialcox/pfizer/noncoviddeath/prior_covid_infection-FALSE/model_*.csv
report_seqtrialcox_pfizer_noncoviddeath_prior_covid_infection-FALSE:
run: r:latest analysis/report_seqtrialcox.R pfizer noncoviddeath prior_covid_infection-FALSE
needs:
- data_selection
- model_seqtrialcox_pfizer_noncoviddeath_prior_covid_infection-FALSE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/noncoviddeath/prior_covid_infection-FALSE/report_*.csv
svg: output/models/seqtrialcox/pfizer/noncoviddeath/prior_covid_infection-FALSE/report_*.svg
png: output/models/seqtrialcox/pfizer/noncoviddeath/prior_covid_infection-FALSE/report_*.png
model_seqtrialcox_pfizer_noncoviddeath_prior_covid_infection-TRUE:
run: r:latest analysis/model_seqtrialcox.R pfizer noncoviddeath prior_covid_infection-TRUE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/noncoviddeath/prior_covid_infection-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/noncoviddeath/prior_covid_infection-TRUE/model_*.txt
csv: output/models/seqtrialcox/pfizer/noncoviddeath/prior_covid_infection-TRUE/model_*.csv
report_seqtrialcox_pfizer_noncoviddeath_prior_covid_infection-TRUE:
run: r:latest analysis/report_seqtrialcox.R pfizer noncoviddeath prior_covid_infection-TRUE
needs:
- data_selection
- model_seqtrialcox_pfizer_noncoviddeath_prior_covid_infection-TRUE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/noncoviddeath/prior_covid_infection-TRUE/report_*.csv
svg: output/models/seqtrialcox/pfizer/noncoviddeath/prior_covid_infection-TRUE/report_*.svg
png: output/models/seqtrialcox/pfizer/noncoviddeath/prior_covid_infection-TRUE/report_*.png
## ### Models by age (''age65plus'')
model_seqtrialcox_pfizer_postest_age65plus-FALSE:
run: r:latest analysis/model_seqtrialcox.R pfizer postest age65plus-FALSE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/postest/age65plus-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/postest/age65plus-FALSE/model_*.txt
csv: output/models/seqtrialcox/pfizer/postest/age65plus-FALSE/model_*.csv
report_seqtrialcox_pfizer_postest_age65plus-FALSE:
run: r:latest analysis/report_seqtrialcox.R pfizer postest age65plus-FALSE
needs:
- data_selection
- model_seqtrialcox_pfizer_postest_age65plus-FALSE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/postest/age65plus-FALSE/report_*.csv
svg: output/models/seqtrialcox/pfizer/postest/age65plus-FALSE/report_*.svg
png: output/models/seqtrialcox/pfizer/postest/age65plus-FALSE/report_*.png
model_seqtrialcox_pfizer_postest_age65plus-TRUE:
run: r:latest analysis/model_seqtrialcox.R pfizer postest age65plus-TRUE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/postest/age65plus-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/postest/age65plus-TRUE/model_*.txt
csv: output/models/seqtrialcox/pfizer/postest/age65plus-TRUE/model_*.csv
report_seqtrialcox_pfizer_postest_age65plus-TRUE:
run: r:latest analysis/report_seqtrialcox.R pfizer postest age65plus-TRUE
needs:
- data_selection
- model_seqtrialcox_pfizer_postest_age65plus-TRUE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/postest/age65plus-TRUE/report_*.csv
svg: output/models/seqtrialcox/pfizer/postest/age65plus-TRUE/report_*.svg
png: output/models/seqtrialcox/pfizer/postest/age65plus-TRUE/report_*.png
model_seqtrialcox_pfizer_covidemergency_age65plus-FALSE:
run: r:latest analysis/model_seqtrialcox.R pfizer covidemergency age65plus-FALSE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/covidemergency/age65plus-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/covidemergency/age65plus-FALSE/model_*.txt
csv: output/models/seqtrialcox/pfizer/covidemergency/age65plus-FALSE/model_*.csv
report_seqtrialcox_pfizer_covidemergency_age65plus-FALSE:
run: r:latest analysis/report_seqtrialcox.R pfizer covidemergency age65plus-FALSE
needs:
- data_selection
- model_seqtrialcox_pfizer_covidemergency_age65plus-FALSE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/covidemergency/age65plus-FALSE/report_*.csv
svg: output/models/seqtrialcox/pfizer/covidemergency/age65plus-FALSE/report_*.svg
png: output/models/seqtrialcox/pfizer/covidemergency/age65plus-FALSE/report_*.png
model_seqtrialcox_pfizer_covidemergency_age65plus-TRUE:
run: r:latest analysis/model_seqtrialcox.R pfizer covidemergency age65plus-TRUE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/covidemergency/age65plus-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/covidemergency/age65plus-TRUE/model_*.txt
csv: output/models/seqtrialcox/pfizer/covidemergency/age65plus-TRUE/model_*.csv
report_seqtrialcox_pfizer_covidemergency_age65plus-TRUE:
run: r:latest analysis/report_seqtrialcox.R pfizer covidemergency age65plus-TRUE
needs:
- data_selection
- model_seqtrialcox_pfizer_covidemergency_age65plus-TRUE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/covidemergency/age65plus-TRUE/report_*.csv
svg: output/models/seqtrialcox/pfizer/covidemergency/age65plus-TRUE/report_*.svg
png: output/models/seqtrialcox/pfizer/covidemergency/age65plus-TRUE/report_*.png
model_seqtrialcox_pfizer_covidadmittedproxy1_age65plus-FALSE:
run: r:latest analysis/model_seqtrialcox.R pfizer covidadmittedproxy1 age65plus-FALSE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/covidadmittedproxy1/age65plus-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/covidadmittedproxy1/age65plus-FALSE/model_*.txt
csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/age65plus-FALSE/model_*.csv
report_seqtrialcox_pfizer_covidadmittedproxy1_age65plus-FALSE:
run: r:latest analysis/report_seqtrialcox.R pfizer covidadmittedproxy1 age65plus-FALSE
needs:
- data_selection
- model_seqtrialcox_pfizer_covidadmittedproxy1_age65plus-FALSE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/age65plus-FALSE/report_*.csv
svg: output/models/seqtrialcox/pfizer/covidadmittedproxy1/age65plus-FALSE/report_*.svg
png: output/models/seqtrialcox/pfizer/covidadmittedproxy1/age65plus-FALSE/report_*.png
model_seqtrialcox_pfizer_covidadmittedproxy1_age65plus-TRUE:
run: r:latest analysis/model_seqtrialcox.R pfizer covidadmittedproxy1 age65plus-TRUE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/covidadmittedproxy1/age65plus-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/covidadmittedproxy1/age65plus-TRUE/model_*.txt
csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/age65plus-TRUE/model_*.csv
report_seqtrialcox_pfizer_covidadmittedproxy1_age65plus-TRUE:
run: r:latest analysis/report_seqtrialcox.R pfizer covidadmittedproxy1 age65plus-TRUE
needs:
- data_selection
- model_seqtrialcox_pfizer_covidadmittedproxy1_age65plus-TRUE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/age65plus-TRUE/report_*.csv
svg: output/models/seqtrialcox/pfizer/covidadmittedproxy1/age65plus-TRUE/report_*.svg
png: output/models/seqtrialcox/pfizer/covidadmittedproxy1/age65plus-TRUE/report_*.png
model_seqtrialcox_pfizer_covidadmitted_age65plus-FALSE:
run: r:latest analysis/model_seqtrialcox.R pfizer covidadmitted age65plus-FALSE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/covidadmitted/age65plus-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/covidadmitted/age65plus-FALSE/model_*.txt
csv: output/models/seqtrialcox/pfizer/covidadmitted/age65plus-FALSE/model_*.csv
report_seqtrialcox_pfizer_covidadmitted_age65plus-FALSE:
run: r:latest analysis/report_seqtrialcox.R pfizer covidadmitted age65plus-FALSE
needs:
- data_selection
- model_seqtrialcox_pfizer_covidadmitted_age65plus-FALSE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/covidadmitted/age65plus-FALSE/report_*.csv
svg: output/models/seqtrialcox/pfizer/covidadmitted/age65plus-FALSE/report_*.svg
png: output/models/seqtrialcox/pfizer/covidadmitted/age65plus-FALSE/report_*.png
model_seqtrialcox_pfizer_covidadmitted_age65plus-TRUE:
run: r:latest analysis/model_seqtrialcox.R pfizer covidadmitted age65plus-TRUE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/covidadmitted/age65plus-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/covidadmitted/age65plus-TRUE/model_*.txt
csv: output/models/seqtrialcox/pfizer/covidadmitted/age65plus-TRUE/model_*.csv
report_seqtrialcox_pfizer_covidadmitted_age65plus-TRUE:
run: r:latest analysis/report_seqtrialcox.R pfizer covidadmitted age65plus-TRUE
needs:
- data_selection
- model_seqtrialcox_pfizer_covidadmitted_age65plus-TRUE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/covidadmitted/age65plus-TRUE/report_*.csv
svg: output/models/seqtrialcox/pfizer/covidadmitted/age65plus-TRUE/report_*.svg
png: output/models/seqtrialcox/pfizer/covidadmitted/age65plus-TRUE/report_*.png
model_seqtrialcox_pfizer_noncovidadmitted_age65plus-FALSE:
run: r:latest analysis/model_seqtrialcox.R pfizer noncovidadmitted age65plus-FALSE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/noncovidadmitted/age65plus-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/noncovidadmitted/age65plus-FALSE/model_*.txt
csv: output/models/seqtrialcox/pfizer/noncovidadmitted/age65plus-FALSE/model_*.csv
report_seqtrialcox_pfizer_noncovidadmitted_age65plus-FALSE:
run: r:latest analysis/report_seqtrialcox.R pfizer noncovidadmitted age65plus-FALSE
needs:
- data_selection
- model_seqtrialcox_pfizer_noncovidadmitted_age65plus-FALSE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/noncovidadmitted/age65plus-FALSE/report_*.csv
svg: output/models/seqtrialcox/pfizer/noncovidadmitted/age65plus-FALSE/report_*.svg
png: output/models/seqtrialcox/pfizer/noncovidadmitted/age65plus-FALSE/report_*.png
model_seqtrialcox_pfizer_noncovidadmitted_age65plus-TRUE:
run: r:latest analysis/model_seqtrialcox.R pfizer noncovidadmitted age65plus-TRUE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/noncovidadmitted/age65plus-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/noncovidadmitted/age65plus-TRUE/model_*.txt
csv: output/models/seqtrialcox/pfizer/noncovidadmitted/age65plus-TRUE/model_*.csv
report_seqtrialcox_pfizer_noncovidadmitted_age65plus-TRUE:
run: r:latest analysis/report_seqtrialcox.R pfizer noncovidadmitted age65plus-TRUE
needs:
- data_selection
- model_seqtrialcox_pfizer_noncovidadmitted_age65plus-TRUE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/noncovidadmitted/age65plus-TRUE/report_*.csv
svg: output/models/seqtrialcox/pfizer/noncovidadmitted/age65plus-TRUE/report_*.svg
png: output/models/seqtrialcox/pfizer/noncovidadmitted/age65plus-TRUE/report_*.png
model_seqtrialcox_pfizer_covidcc_age65plus-FALSE:
run: r:latest analysis/model_seqtrialcox.R pfizer covidcc age65plus-FALSE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/covidcc/age65plus-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/covidcc/age65plus-FALSE/model_*.txt
csv: output/models/seqtrialcox/pfizer/covidcc/age65plus-FALSE/model_*.csv
report_seqtrialcox_pfizer_covidcc_age65plus-FALSE:
run: r:latest analysis/report_seqtrialcox.R pfizer covidcc age65plus-FALSE
needs:
- data_selection
- model_seqtrialcox_pfizer_covidcc_age65plus-FALSE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/covidcc/age65plus-FALSE/report_*.csv
svg: output/models/seqtrialcox/pfizer/covidcc/age65plus-FALSE/report_*.svg
png: output/models/seqtrialcox/pfizer/covidcc/age65plus-FALSE/report_*.png
model_seqtrialcox_pfizer_covidcc_age65plus-TRUE:
run: r:latest analysis/model_seqtrialcox.R pfizer covidcc age65plus-TRUE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/covidcc/age65plus-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/covidcc/age65plus-TRUE/model_*.txt
csv: output/models/seqtrialcox/pfizer/covidcc/age65plus-TRUE/model_*.csv
report_seqtrialcox_pfizer_covidcc_age65plus-TRUE:
run: r:latest analysis/report_seqtrialcox.R pfizer covidcc age65plus-TRUE
needs:
- data_selection
- model_seqtrialcox_pfizer_covidcc_age65plus-TRUE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/covidcc/age65plus-TRUE/report_*.csv
svg: output/models/seqtrialcox/pfizer/covidcc/age65plus-TRUE/report_*.svg
png: output/models/seqtrialcox/pfizer/covidcc/age65plus-TRUE/report_*.png
model_seqtrialcox_pfizer_coviddeath_age65plus-FALSE:
run: r:latest analysis/model_seqtrialcox.R pfizer coviddeath age65plus-FALSE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/coviddeath/age65plus-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/coviddeath/age65plus-FALSE/model_*.txt
csv: output/models/seqtrialcox/pfizer/coviddeath/age65plus-FALSE/model_*.csv
report_seqtrialcox_pfizer_coviddeath_age65plus-FALSE:
run: r:latest analysis/report_seqtrialcox.R pfizer coviddeath age65plus-FALSE
needs:
- data_selection
- model_seqtrialcox_pfizer_coviddeath_age65plus-FALSE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/coviddeath/age65plus-FALSE/report_*.csv
svg: output/models/seqtrialcox/pfizer/coviddeath/age65plus-FALSE/report_*.svg
png: output/models/seqtrialcox/pfizer/coviddeath/age65plus-FALSE/report_*.png
model_seqtrialcox_pfizer_coviddeath_age65plus-TRUE:
run: r:latest analysis/model_seqtrialcox.R pfizer coviddeath age65plus-TRUE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/coviddeath/age65plus-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/coviddeath/age65plus-TRUE/model_*.txt
csv: output/models/seqtrialcox/pfizer/coviddeath/age65plus-TRUE/model_*.csv
report_seqtrialcox_pfizer_coviddeath_age65plus-TRUE:
run: r:latest analysis/report_seqtrialcox.R pfizer coviddeath age65plus-TRUE
needs:
- data_selection
- model_seqtrialcox_pfizer_coviddeath_age65plus-TRUE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/coviddeath/age65plus-TRUE/report_*.csv
svg: output/models/seqtrialcox/pfizer/coviddeath/age65plus-TRUE/report_*.svg
png: output/models/seqtrialcox/pfizer/coviddeath/age65plus-TRUE/report_*.png
model_seqtrialcox_pfizer_noncoviddeath_age65plus-FALSE:
run: r:latest analysis/model_seqtrialcox.R pfizer noncoviddeath age65plus-FALSE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/noncoviddeath/age65plus-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/noncoviddeath/age65plus-FALSE/model_*.txt
csv: output/models/seqtrialcox/pfizer/noncoviddeath/age65plus-FALSE/model_*.csv
report_seqtrialcox_pfizer_noncoviddeath_age65plus-FALSE:
run: r:latest analysis/report_seqtrialcox.R pfizer noncoviddeath age65plus-FALSE
needs:
- data_selection
- model_seqtrialcox_pfizer_noncoviddeath_age65plus-FALSE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/noncoviddeath/age65plus-FALSE/report_*.csv
svg: output/models/seqtrialcox/pfizer/noncoviddeath/age65plus-FALSE/report_*.svg
png: output/models/seqtrialcox/pfizer/noncoviddeath/age65plus-FALSE/report_*.png
model_seqtrialcox_pfizer_noncoviddeath_age65plus-TRUE:
run: r:latest analysis/model_seqtrialcox.R pfizer noncoviddeath age65plus-TRUE
needs:
- match_seqtrialcox_pfizer
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/pfizer/noncoviddeath/age65plus-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/pfizer/noncoviddeath/age65plus-TRUE/model_*.txt
csv: output/models/seqtrialcox/pfizer/noncoviddeath/age65plus-TRUE/model_*.csv
report_seqtrialcox_pfizer_noncoviddeath_age65plus-TRUE:
run: r:latest analysis/report_seqtrialcox.R pfizer noncoviddeath age65plus-TRUE
needs:
- data_selection
- model_seqtrialcox_pfizer_noncoviddeath_age65plus-TRUE
- match_seqtrialcox_pfizer
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/pfizer/noncoviddeath/age65plus-TRUE/report_*.csv
svg: output/models/seqtrialcox/pfizer/noncoviddeath/age65plus-TRUE/report_*.svg
png: output/models/seqtrialcox/pfizer/noncoviddeath/age65plus-TRUE/report_*.png
## # # # # # # # # # # # # # # # # # # #
## Moderna models
## # # # # # # # # # # # # # # # # # # #
## ### Overall models (''none'')
model_seqtrialcox_moderna_postest_none:
run: r:latest analysis/model_seqtrialcox.R moderna postest none
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/postest/none/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/postest/none/model_*.txt
csv: output/models/seqtrialcox/moderna/postest/none/model_*.csv
report_seqtrialcox_moderna_postest_none:
run: r:latest analysis/report_seqtrialcox.R moderna postest none
needs:
- data_selection
- model_seqtrialcox_moderna_postest_none
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/postest/none/report_*.csv
svg: output/models/seqtrialcox/moderna/postest/none/report_*.svg
png: output/models/seqtrialcox/moderna/postest/none/report_*.png
model_seqtrialcox_moderna_covidemergency_none:
run: r:latest analysis/model_seqtrialcox.R moderna covidemergency none
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/covidemergency/none/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/covidemergency/none/model_*.txt
csv: output/models/seqtrialcox/moderna/covidemergency/none/model_*.csv
report_seqtrialcox_moderna_covidemergency_none:
run: r:latest analysis/report_seqtrialcox.R moderna covidemergency none
needs:
- data_selection
- model_seqtrialcox_moderna_covidemergency_none
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/covidemergency/none/report_*.csv
svg: output/models/seqtrialcox/moderna/covidemergency/none/report_*.svg
png: output/models/seqtrialcox/moderna/covidemergency/none/report_*.png
model_seqtrialcox_moderna_covidadmittedproxy1_none:
run: r:latest analysis/model_seqtrialcox.R moderna covidadmittedproxy1 none
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/covidadmittedproxy1/none/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/covidadmittedproxy1/none/model_*.txt
csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/none/model_*.csv
report_seqtrialcox_moderna_covidadmittedproxy1_none:
run: r:latest analysis/report_seqtrialcox.R moderna covidadmittedproxy1 none
needs:
- data_selection
- model_seqtrialcox_moderna_covidadmittedproxy1_none
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/none/report_*.csv
svg: output/models/seqtrialcox/moderna/covidadmittedproxy1/none/report_*.svg
png: output/models/seqtrialcox/moderna/covidadmittedproxy1/none/report_*.png
model_seqtrialcox_moderna_covidadmitted_none:
run: r:latest analysis/model_seqtrialcox.R moderna covidadmitted none
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/covidadmitted/none/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/covidadmitted/none/model_*.txt
csv: output/models/seqtrialcox/moderna/covidadmitted/none/model_*.csv
report_seqtrialcox_moderna_covidadmitted_none:
run: r:latest analysis/report_seqtrialcox.R moderna covidadmitted none
needs:
- data_selection
- model_seqtrialcox_moderna_covidadmitted_none
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/covidadmitted/none/report_*.csv
svg: output/models/seqtrialcox/moderna/covidadmitted/none/report_*.svg
png: output/models/seqtrialcox/moderna/covidadmitted/none/report_*.png
model_seqtrialcox_moderna_noncovidadmitted_none:
run: r:latest analysis/model_seqtrialcox.R moderna noncovidadmitted none
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/noncovidadmitted/none/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/noncovidadmitted/none/model_*.txt
csv: output/models/seqtrialcox/moderna/noncovidadmitted/none/model_*.csv
report_seqtrialcox_moderna_noncovidadmitted_none:
run: r:latest analysis/report_seqtrialcox.R moderna noncovidadmitted none
needs:
- data_selection
- model_seqtrialcox_moderna_noncovidadmitted_none
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/noncovidadmitted/none/report_*.csv
svg: output/models/seqtrialcox/moderna/noncovidadmitted/none/report_*.svg
png: output/models/seqtrialcox/moderna/noncovidadmitted/none/report_*.png
model_seqtrialcox_moderna_covidcc_none:
run: r:latest analysis/model_seqtrialcox.R moderna covidcc none
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/covidcc/none/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/covidcc/none/model_*.txt
csv: output/models/seqtrialcox/moderna/covidcc/none/model_*.csv
report_seqtrialcox_moderna_covidcc_none:
run: r:latest analysis/report_seqtrialcox.R moderna covidcc none
needs:
- data_selection
- model_seqtrialcox_moderna_covidcc_none
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/covidcc/none/report_*.csv
svg: output/models/seqtrialcox/moderna/covidcc/none/report_*.svg
png: output/models/seqtrialcox/moderna/covidcc/none/report_*.png
model_seqtrialcox_moderna_coviddeath_none:
run: r:latest analysis/model_seqtrialcox.R moderna coviddeath none
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/coviddeath/none/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/coviddeath/none/model_*.txt
csv: output/models/seqtrialcox/moderna/coviddeath/none/model_*.csv
report_seqtrialcox_moderna_coviddeath_none:
run: r:latest analysis/report_seqtrialcox.R moderna coviddeath none
needs:
- data_selection
- model_seqtrialcox_moderna_coviddeath_none
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/coviddeath/none/report_*.csv
svg: output/models/seqtrialcox/moderna/coviddeath/none/report_*.svg
png: output/models/seqtrialcox/moderna/coviddeath/none/report_*.png
model_seqtrialcox_moderna_noncoviddeath_none:
run: r:latest analysis/model_seqtrialcox.R moderna noncoviddeath none
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/noncoviddeath/none/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/noncoviddeath/none/model_*.txt
csv: output/models/seqtrialcox/moderna/noncoviddeath/none/model_*.csv
report_seqtrialcox_moderna_noncoviddeath_none:
run: r:latest analysis/report_seqtrialcox.R moderna noncoviddeath none
needs:
- data_selection
- model_seqtrialcox_moderna_noncoviddeath_none
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/noncoviddeath/none/report_*.csv
svg: output/models/seqtrialcox/moderna/noncoviddeath/none/report_*.svg
png: output/models/seqtrialcox/moderna/noncoviddeath/none/report_*.png
## ### Models by primary course (''vax12_type'')
model_seqtrialcox_moderna_postest_vax12_type-az-az:
run: r:latest analysis/model_seqtrialcox.R moderna postest vax12_type-az-az
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/postest/vax12_type-az-az/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/postest/vax12_type-az-az/model_*.txt
csv: output/models/seqtrialcox/moderna/postest/vax12_type-az-az/model_*.csv
report_seqtrialcox_moderna_postest_vax12_type-az-az:
run: r:latest analysis/report_seqtrialcox.R moderna postest vax12_type-az-az
needs:
- data_selection
- model_seqtrialcox_moderna_postest_vax12_type-az-az
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/postest/vax12_type-az-az/report_*.csv
svg: output/models/seqtrialcox/moderna/postest/vax12_type-az-az/report_*.svg
png: output/models/seqtrialcox/moderna/postest/vax12_type-az-az/report_*.png
model_seqtrialcox_moderna_postest_vax12_type-pfizer-pfizer:
run: r:latest analysis/model_seqtrialcox.R moderna postest vax12_type-pfizer-pfizer
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/postest/vax12_type-pfizer-pfizer/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/postest/vax12_type-pfizer-pfizer/model_*.txt
csv: output/models/seqtrialcox/moderna/postest/vax12_type-pfizer-pfizer/model_*.csv
report_seqtrialcox_moderna_postest_vax12_type-pfizer-pfizer:
run: r:latest analysis/report_seqtrialcox.R moderna postest vax12_type-pfizer-pfizer
needs:
- data_selection
- model_seqtrialcox_moderna_postest_vax12_type-pfizer-pfizer
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/postest/vax12_type-pfizer-pfizer/report_*.csv
svg: output/models/seqtrialcox/moderna/postest/vax12_type-pfizer-pfizer/report_*.svg
png: output/models/seqtrialcox/moderna/postest/vax12_type-pfizer-pfizer/report_*.png
model_seqtrialcox_moderna_covidemergency_vax12_type-az-az:
run: r:latest analysis/model_seqtrialcox.R moderna covidemergency vax12_type-az-az
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/covidemergency/vax12_type-az-az/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/covidemergency/vax12_type-az-az/model_*.txt
csv: output/models/seqtrialcox/moderna/covidemergency/vax12_type-az-az/model_*.csv
report_seqtrialcox_moderna_covidemergency_vax12_type-az-az:
run: r:latest analysis/report_seqtrialcox.R moderna covidemergency vax12_type-az-az
needs:
- data_selection
- model_seqtrialcox_moderna_covidemergency_vax12_type-az-az
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/covidemergency/vax12_type-az-az/report_*.csv
svg: output/models/seqtrialcox/moderna/covidemergency/vax12_type-az-az/report_*.svg
png: output/models/seqtrialcox/moderna/covidemergency/vax12_type-az-az/report_*.png
model_seqtrialcox_moderna_covidemergency_vax12_type-pfizer-pfizer:
run: r:latest analysis/model_seqtrialcox.R moderna covidemergency vax12_type-pfizer-pfizer
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/covidemergency/vax12_type-pfizer-pfizer/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/covidemergency/vax12_type-pfizer-pfizer/model_*.txt
csv: output/models/seqtrialcox/moderna/covidemergency/vax12_type-pfizer-pfizer/model_*.csv
report_seqtrialcox_moderna_covidemergency_vax12_type-pfizer-pfizer:
run: r:latest analysis/report_seqtrialcox.R moderna covidemergency vax12_type-pfizer-pfizer
needs:
- data_selection
- model_seqtrialcox_moderna_covidemergency_vax12_type-pfizer-pfizer
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/covidemergency/vax12_type-pfizer-pfizer/report_*.csv
svg: output/models/seqtrialcox/moderna/covidemergency/vax12_type-pfizer-pfizer/report_*.svg
png: output/models/seqtrialcox/moderna/covidemergency/vax12_type-pfizer-pfizer/report_*.png
model_seqtrialcox_moderna_covidadmittedproxy1_vax12_type-az-az:
run: r:latest analysis/model_seqtrialcox.R moderna covidadmittedproxy1 vax12_type-az-az
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/covidadmittedproxy1/vax12_type-az-az/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/covidadmittedproxy1/vax12_type-az-az/model_*.txt
csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/vax12_type-az-az/model_*.csv
report_seqtrialcox_moderna_covidadmittedproxy1_vax12_type-az-az:
run: r:latest analysis/report_seqtrialcox.R moderna covidadmittedproxy1 vax12_type-az-az
needs:
- data_selection
- model_seqtrialcox_moderna_covidadmittedproxy1_vax12_type-az-az
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/vax12_type-az-az/report_*.csv
svg: output/models/seqtrialcox/moderna/covidadmittedproxy1/vax12_type-az-az/report_*.svg
png: output/models/seqtrialcox/moderna/covidadmittedproxy1/vax12_type-az-az/report_*.png
model_seqtrialcox_moderna_covidadmittedproxy1_vax12_type-pfizer-pfizer:
run: r:latest analysis/model_seqtrialcox.R moderna covidadmittedproxy1 vax12_type-pfizer-pfizer
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/covidadmittedproxy1/vax12_type-pfizer-pfizer/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/covidadmittedproxy1/vax12_type-pfizer-pfizer/model_*.txt
csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/vax12_type-pfizer-pfizer/model_*.csv
report_seqtrialcox_moderna_covidadmittedproxy1_vax12_type-pfizer-pfizer:
run: r:latest analysis/report_seqtrialcox.R moderna covidadmittedproxy1 vax12_type-pfizer-pfizer
needs:
- data_selection
- model_seqtrialcox_moderna_covidadmittedproxy1_vax12_type-pfizer-pfizer
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/vax12_type-pfizer-pfizer/report_*.csv
svg: output/models/seqtrialcox/moderna/covidadmittedproxy1/vax12_type-pfizer-pfizer/report_*.svg
png: output/models/seqtrialcox/moderna/covidadmittedproxy1/vax12_type-pfizer-pfizer/report_*.png
model_seqtrialcox_moderna_covidadmitted_vax12_type-az-az:
run: r:latest analysis/model_seqtrialcox.R moderna covidadmitted vax12_type-az-az
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/covidadmitted/vax12_type-az-az/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/covidadmitted/vax12_type-az-az/model_*.txt
csv: output/models/seqtrialcox/moderna/covidadmitted/vax12_type-az-az/model_*.csv
report_seqtrialcox_moderna_covidadmitted_vax12_type-az-az:
run: r:latest analysis/report_seqtrialcox.R moderna covidadmitted vax12_type-az-az
needs:
- data_selection
- model_seqtrialcox_moderna_covidadmitted_vax12_type-az-az
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/covidadmitted/vax12_type-az-az/report_*.csv
svg: output/models/seqtrialcox/moderna/covidadmitted/vax12_type-az-az/report_*.svg
png: output/models/seqtrialcox/moderna/covidadmitted/vax12_type-az-az/report_*.png
model_seqtrialcox_moderna_covidadmitted_vax12_type-pfizer-pfizer:
run: r:latest analysis/model_seqtrialcox.R moderna covidadmitted vax12_type-pfizer-pfizer
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/covidadmitted/vax12_type-pfizer-pfizer/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/covidadmitted/vax12_type-pfizer-pfizer/model_*.txt
csv: output/models/seqtrialcox/moderna/covidadmitted/vax12_type-pfizer-pfizer/model_*.csv
report_seqtrialcox_moderna_covidadmitted_vax12_type-pfizer-pfizer:
run: r:latest analysis/report_seqtrialcox.R moderna covidadmitted vax12_type-pfizer-pfizer
needs:
- data_selection
- model_seqtrialcox_moderna_covidadmitted_vax12_type-pfizer-pfizer
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/covidadmitted/vax12_type-pfizer-pfizer/report_*.csv
svg: output/models/seqtrialcox/moderna/covidadmitted/vax12_type-pfizer-pfizer/report_*.svg
png: output/models/seqtrialcox/moderna/covidadmitted/vax12_type-pfizer-pfizer/report_*.png
model_seqtrialcox_moderna_noncovidadmitted_vax12_type-az-az:
run: r:latest analysis/model_seqtrialcox.R moderna noncovidadmitted vax12_type-az-az
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/noncovidadmitted/vax12_type-az-az/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/noncovidadmitted/vax12_type-az-az/model_*.txt
csv: output/models/seqtrialcox/moderna/noncovidadmitted/vax12_type-az-az/model_*.csv
report_seqtrialcox_moderna_noncovidadmitted_vax12_type-az-az:
run: r:latest analysis/report_seqtrialcox.R moderna noncovidadmitted vax12_type-az-az
needs:
- data_selection
- model_seqtrialcox_moderna_noncovidadmitted_vax12_type-az-az
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/noncovidadmitted/vax12_type-az-az/report_*.csv
svg: output/models/seqtrialcox/moderna/noncovidadmitted/vax12_type-az-az/report_*.svg
png: output/models/seqtrialcox/moderna/noncovidadmitted/vax12_type-az-az/report_*.png
model_seqtrialcox_moderna_noncovidadmitted_vax12_type-pfizer-pfizer:
run: r:latest analysis/model_seqtrialcox.R moderna noncovidadmitted vax12_type-pfizer-pfizer
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/noncovidadmitted/vax12_type-pfizer-pfizer/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/noncovidadmitted/vax12_type-pfizer-pfizer/model_*.txt
csv: output/models/seqtrialcox/moderna/noncovidadmitted/vax12_type-pfizer-pfizer/model_*.csv
report_seqtrialcox_moderna_noncovidadmitted_vax12_type-pfizer-pfizer:
run: r:latest analysis/report_seqtrialcox.R moderna noncovidadmitted vax12_type-pfizer-pfizer
needs:
- data_selection
- model_seqtrialcox_moderna_noncovidadmitted_vax12_type-pfizer-pfizer
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/noncovidadmitted/vax12_type-pfizer-pfizer/report_*.csv
svg: output/models/seqtrialcox/moderna/noncovidadmitted/vax12_type-pfizer-pfizer/report_*.svg
png: output/models/seqtrialcox/moderna/noncovidadmitted/vax12_type-pfizer-pfizer/report_*.png
model_seqtrialcox_moderna_covidcc_vax12_type-az-az:
run: r:latest analysis/model_seqtrialcox.R moderna covidcc vax12_type-az-az
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/covidcc/vax12_type-az-az/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/covidcc/vax12_type-az-az/model_*.txt
csv: output/models/seqtrialcox/moderna/covidcc/vax12_type-az-az/model_*.csv
report_seqtrialcox_moderna_covidcc_vax12_type-az-az:
run: r:latest analysis/report_seqtrialcox.R moderna covidcc vax12_type-az-az
needs:
- data_selection
- model_seqtrialcox_moderna_covidcc_vax12_type-az-az
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/covidcc/vax12_type-az-az/report_*.csv
svg: output/models/seqtrialcox/moderna/covidcc/vax12_type-az-az/report_*.svg
png: output/models/seqtrialcox/moderna/covidcc/vax12_type-az-az/report_*.png
model_seqtrialcox_moderna_covidcc_vax12_type-pfizer-pfizer:
run: r:latest analysis/model_seqtrialcox.R moderna covidcc vax12_type-pfizer-pfizer
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/covidcc/vax12_type-pfizer-pfizer/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/covidcc/vax12_type-pfizer-pfizer/model_*.txt
csv: output/models/seqtrialcox/moderna/covidcc/vax12_type-pfizer-pfizer/model_*.csv
report_seqtrialcox_moderna_covidcc_vax12_type-pfizer-pfizer:
run: r:latest analysis/report_seqtrialcox.R moderna covidcc vax12_type-pfizer-pfizer
needs:
- data_selection
- model_seqtrialcox_moderna_covidcc_vax12_type-pfizer-pfizer
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/covidcc/vax12_type-pfizer-pfizer/report_*.csv
svg: output/models/seqtrialcox/moderna/covidcc/vax12_type-pfizer-pfizer/report_*.svg
png: output/models/seqtrialcox/moderna/covidcc/vax12_type-pfizer-pfizer/report_*.png
model_seqtrialcox_moderna_coviddeath_vax12_type-az-az:
run: r:latest analysis/model_seqtrialcox.R moderna coviddeath vax12_type-az-az
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/coviddeath/vax12_type-az-az/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/coviddeath/vax12_type-az-az/model_*.txt
csv: output/models/seqtrialcox/moderna/coviddeath/vax12_type-az-az/model_*.csv
report_seqtrialcox_moderna_coviddeath_vax12_type-az-az:
run: r:latest analysis/report_seqtrialcox.R moderna coviddeath vax12_type-az-az
needs:
- data_selection
- model_seqtrialcox_moderna_coviddeath_vax12_type-az-az
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/coviddeath/vax12_type-az-az/report_*.csv
svg: output/models/seqtrialcox/moderna/coviddeath/vax12_type-az-az/report_*.svg
png: output/models/seqtrialcox/moderna/coviddeath/vax12_type-az-az/report_*.png
model_seqtrialcox_moderna_coviddeath_vax12_type-pfizer-pfizer:
run: r:latest analysis/model_seqtrialcox.R moderna coviddeath vax12_type-pfizer-pfizer
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/coviddeath/vax12_type-pfizer-pfizer/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/coviddeath/vax12_type-pfizer-pfizer/model_*.txt
csv: output/models/seqtrialcox/moderna/coviddeath/vax12_type-pfizer-pfizer/model_*.csv
report_seqtrialcox_moderna_coviddeath_vax12_type-pfizer-pfizer:
run: r:latest analysis/report_seqtrialcox.R moderna coviddeath vax12_type-pfizer-pfizer
needs:
- data_selection
- model_seqtrialcox_moderna_coviddeath_vax12_type-pfizer-pfizer
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/coviddeath/vax12_type-pfizer-pfizer/report_*.csv
svg: output/models/seqtrialcox/moderna/coviddeath/vax12_type-pfizer-pfizer/report_*.svg
png: output/models/seqtrialcox/moderna/coviddeath/vax12_type-pfizer-pfizer/report_*.png
model_seqtrialcox_moderna_noncoviddeath_vax12_type-az-az:
run: r:latest analysis/model_seqtrialcox.R moderna noncoviddeath vax12_type-az-az
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/noncoviddeath/vax12_type-az-az/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/noncoviddeath/vax12_type-az-az/model_*.txt
csv: output/models/seqtrialcox/moderna/noncoviddeath/vax12_type-az-az/model_*.csv
report_seqtrialcox_moderna_noncoviddeath_vax12_type-az-az:
run: r:latest analysis/report_seqtrialcox.R moderna noncoviddeath vax12_type-az-az
needs:
- data_selection
- model_seqtrialcox_moderna_noncoviddeath_vax12_type-az-az
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/noncoviddeath/vax12_type-az-az/report_*.csv
svg: output/models/seqtrialcox/moderna/noncoviddeath/vax12_type-az-az/report_*.svg
png: output/models/seqtrialcox/moderna/noncoviddeath/vax12_type-az-az/report_*.png
model_seqtrialcox_moderna_noncoviddeath_vax12_type-pfizer-pfizer:
run: r:latest analysis/model_seqtrialcox.R moderna noncoviddeath vax12_type-pfizer-pfizer
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/noncoviddeath/vax12_type-pfizer-pfizer/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/noncoviddeath/vax12_type-pfizer-pfizer/model_*.txt
csv: output/models/seqtrialcox/moderna/noncoviddeath/vax12_type-pfizer-pfizer/model_*.csv
report_seqtrialcox_moderna_noncoviddeath_vax12_type-pfizer-pfizer:
run: r:latest analysis/report_seqtrialcox.R moderna noncoviddeath vax12_type-pfizer-pfizer
needs:
- data_selection
- model_seqtrialcox_moderna_noncoviddeath_vax12_type-pfizer-pfizer
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/noncoviddeath/vax12_type-pfizer-pfizer/report_*.csv
svg: output/models/seqtrialcox/moderna/noncoviddeath/vax12_type-pfizer-pfizer/report_*.svg
png: output/models/seqtrialcox/moderna/noncoviddeath/vax12_type-pfizer-pfizer/report_*.png
## ### Models by clinical extremely vulnerable (''cev'')
model_seqtrialcox_moderna_postest_cev-FALSE:
run: r:latest analysis/model_seqtrialcox.R moderna postest cev-FALSE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/postest/cev-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/postest/cev-FALSE/model_*.txt
csv: output/models/seqtrialcox/moderna/postest/cev-FALSE/model_*.csv
report_seqtrialcox_moderna_postest_cev-FALSE:
run: r:latest analysis/report_seqtrialcox.R moderna postest cev-FALSE
needs:
- data_selection
- model_seqtrialcox_moderna_postest_cev-FALSE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/postest/cev-FALSE/report_*.csv
svg: output/models/seqtrialcox/moderna/postest/cev-FALSE/report_*.svg
png: output/models/seqtrialcox/moderna/postest/cev-FALSE/report_*.png
model_seqtrialcox_moderna_postest_cev-TRUE:
run: r:latest analysis/model_seqtrialcox.R moderna postest cev-TRUE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/postest/cev-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/postest/cev-TRUE/model_*.txt
csv: output/models/seqtrialcox/moderna/postest/cev-TRUE/model_*.csv
report_seqtrialcox_moderna_postest_cev-TRUE:
run: r:latest analysis/report_seqtrialcox.R moderna postest cev-TRUE
needs:
- data_selection
- model_seqtrialcox_moderna_postest_cev-TRUE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/postest/cev-TRUE/report_*.csv
svg: output/models/seqtrialcox/moderna/postest/cev-TRUE/report_*.svg
png: output/models/seqtrialcox/moderna/postest/cev-TRUE/report_*.png
model_seqtrialcox_moderna_covidemergency_cev-FALSE:
run: r:latest analysis/model_seqtrialcox.R moderna covidemergency cev-FALSE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/covidemergency/cev-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/covidemergency/cev-FALSE/model_*.txt
csv: output/models/seqtrialcox/moderna/covidemergency/cev-FALSE/model_*.csv
report_seqtrialcox_moderna_covidemergency_cev-FALSE:
run: r:latest analysis/report_seqtrialcox.R moderna covidemergency cev-FALSE
needs:
- data_selection
- model_seqtrialcox_moderna_covidemergency_cev-FALSE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/covidemergency/cev-FALSE/report_*.csv
svg: output/models/seqtrialcox/moderna/covidemergency/cev-FALSE/report_*.svg
png: output/models/seqtrialcox/moderna/covidemergency/cev-FALSE/report_*.png
model_seqtrialcox_moderna_covidemergency_cev-TRUE:
run: r:latest analysis/model_seqtrialcox.R moderna covidemergency cev-TRUE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/covidemergency/cev-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/covidemergency/cev-TRUE/model_*.txt
csv: output/models/seqtrialcox/moderna/covidemergency/cev-TRUE/model_*.csv
report_seqtrialcox_moderna_covidemergency_cev-TRUE:
run: r:latest analysis/report_seqtrialcox.R moderna covidemergency cev-TRUE
needs:
- data_selection
- model_seqtrialcox_moderna_covidemergency_cev-TRUE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/covidemergency/cev-TRUE/report_*.csv
svg: output/models/seqtrialcox/moderna/covidemergency/cev-TRUE/report_*.svg
png: output/models/seqtrialcox/moderna/covidemergency/cev-TRUE/report_*.png
model_seqtrialcox_moderna_covidadmittedproxy1_cev-FALSE:
run: r:latest analysis/model_seqtrialcox.R moderna covidadmittedproxy1 cev-FALSE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/covidadmittedproxy1/cev-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/covidadmittedproxy1/cev-FALSE/model_*.txt
csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/cev-FALSE/model_*.csv
report_seqtrialcox_moderna_covidadmittedproxy1_cev-FALSE:
run: r:latest analysis/report_seqtrialcox.R moderna covidadmittedproxy1 cev-FALSE
needs:
- data_selection
- model_seqtrialcox_moderna_covidadmittedproxy1_cev-FALSE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/cev-FALSE/report_*.csv
svg: output/models/seqtrialcox/moderna/covidadmittedproxy1/cev-FALSE/report_*.svg
png: output/models/seqtrialcox/moderna/covidadmittedproxy1/cev-FALSE/report_*.png
model_seqtrialcox_moderna_covidadmittedproxy1_cev-TRUE:
run: r:latest analysis/model_seqtrialcox.R moderna covidadmittedproxy1 cev-TRUE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/covidadmittedproxy1/cev-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/covidadmittedproxy1/cev-TRUE/model_*.txt
csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/cev-TRUE/model_*.csv
report_seqtrialcox_moderna_covidadmittedproxy1_cev-TRUE:
run: r:latest analysis/report_seqtrialcox.R moderna covidadmittedproxy1 cev-TRUE
needs:
- data_selection
- model_seqtrialcox_moderna_covidadmittedproxy1_cev-TRUE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/cev-TRUE/report_*.csv
svg: output/models/seqtrialcox/moderna/covidadmittedproxy1/cev-TRUE/report_*.svg
png: output/models/seqtrialcox/moderna/covidadmittedproxy1/cev-TRUE/report_*.png
model_seqtrialcox_moderna_covidadmitted_cev-FALSE:
run: r:latest analysis/model_seqtrialcox.R moderna covidadmitted cev-FALSE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/covidadmitted/cev-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/covidadmitted/cev-FALSE/model_*.txt
csv: output/models/seqtrialcox/moderna/covidadmitted/cev-FALSE/model_*.csv
report_seqtrialcox_moderna_covidadmitted_cev-FALSE:
run: r:latest analysis/report_seqtrialcox.R moderna covidadmitted cev-FALSE
needs:
- data_selection
- model_seqtrialcox_moderna_covidadmitted_cev-FALSE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/covidadmitted/cev-FALSE/report_*.csv
svg: output/models/seqtrialcox/moderna/covidadmitted/cev-FALSE/report_*.svg
png: output/models/seqtrialcox/moderna/covidadmitted/cev-FALSE/report_*.png
model_seqtrialcox_moderna_covidadmitted_cev-TRUE:
run: r:latest analysis/model_seqtrialcox.R moderna covidadmitted cev-TRUE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/covidadmitted/cev-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/covidadmitted/cev-TRUE/model_*.txt
csv: output/models/seqtrialcox/moderna/covidadmitted/cev-TRUE/model_*.csv
report_seqtrialcox_moderna_covidadmitted_cev-TRUE:
run: r:latest analysis/report_seqtrialcox.R moderna covidadmitted cev-TRUE
needs:
- data_selection
- model_seqtrialcox_moderna_covidadmitted_cev-TRUE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/covidadmitted/cev-TRUE/report_*.csv
svg: output/models/seqtrialcox/moderna/covidadmitted/cev-TRUE/report_*.svg
png: output/models/seqtrialcox/moderna/covidadmitted/cev-TRUE/report_*.png
model_seqtrialcox_moderna_noncovidadmitted_cev-FALSE:
run: r:latest analysis/model_seqtrialcox.R moderna noncovidadmitted cev-FALSE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/noncovidadmitted/cev-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/noncovidadmitted/cev-FALSE/model_*.txt
csv: output/models/seqtrialcox/moderna/noncovidadmitted/cev-FALSE/model_*.csv
report_seqtrialcox_moderna_noncovidadmitted_cev-FALSE:
run: r:latest analysis/report_seqtrialcox.R moderna noncovidadmitted cev-FALSE
needs:
- data_selection
- model_seqtrialcox_moderna_noncovidadmitted_cev-FALSE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/noncovidadmitted/cev-FALSE/report_*.csv
svg: output/models/seqtrialcox/moderna/noncovidadmitted/cev-FALSE/report_*.svg
png: output/models/seqtrialcox/moderna/noncovidadmitted/cev-FALSE/report_*.png
model_seqtrialcox_moderna_noncovidadmitted_cev-TRUE:
run: r:latest analysis/model_seqtrialcox.R moderna noncovidadmitted cev-TRUE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/noncovidadmitted/cev-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/noncovidadmitted/cev-TRUE/model_*.txt
csv: output/models/seqtrialcox/moderna/noncovidadmitted/cev-TRUE/model_*.csv
report_seqtrialcox_moderna_noncovidadmitted_cev-TRUE:
run: r:latest analysis/report_seqtrialcox.R moderna noncovidadmitted cev-TRUE
needs:
- data_selection
- model_seqtrialcox_moderna_noncovidadmitted_cev-TRUE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/noncovidadmitted/cev-TRUE/report_*.csv
svg: output/models/seqtrialcox/moderna/noncovidadmitted/cev-TRUE/report_*.svg
png: output/models/seqtrialcox/moderna/noncovidadmitted/cev-TRUE/report_*.png
model_seqtrialcox_moderna_covidcc_cev-FALSE:
run: r:latest analysis/model_seqtrialcox.R moderna covidcc cev-FALSE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/covidcc/cev-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/covidcc/cev-FALSE/model_*.txt
csv: output/models/seqtrialcox/moderna/covidcc/cev-FALSE/model_*.csv
report_seqtrialcox_moderna_covidcc_cev-FALSE:
run: r:latest analysis/report_seqtrialcox.R moderna covidcc cev-FALSE
needs:
- data_selection
- model_seqtrialcox_moderna_covidcc_cev-FALSE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/covidcc/cev-FALSE/report_*.csv
svg: output/models/seqtrialcox/moderna/covidcc/cev-FALSE/report_*.svg
png: output/models/seqtrialcox/moderna/covidcc/cev-FALSE/report_*.png
model_seqtrialcox_moderna_covidcc_cev-TRUE:
run: r:latest analysis/model_seqtrialcox.R moderna covidcc cev-TRUE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/covidcc/cev-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/covidcc/cev-TRUE/model_*.txt
csv: output/models/seqtrialcox/moderna/covidcc/cev-TRUE/model_*.csv
report_seqtrialcox_moderna_covidcc_cev-TRUE:
run: r:latest analysis/report_seqtrialcox.R moderna covidcc cev-TRUE
needs:
- data_selection
- model_seqtrialcox_moderna_covidcc_cev-TRUE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/covidcc/cev-TRUE/report_*.csv
svg: output/models/seqtrialcox/moderna/covidcc/cev-TRUE/report_*.svg
png: output/models/seqtrialcox/moderna/covidcc/cev-TRUE/report_*.png
model_seqtrialcox_moderna_coviddeath_cev-FALSE:
run: r:latest analysis/model_seqtrialcox.R moderna coviddeath cev-FALSE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/coviddeath/cev-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/coviddeath/cev-FALSE/model_*.txt
csv: output/models/seqtrialcox/moderna/coviddeath/cev-FALSE/model_*.csv
report_seqtrialcox_moderna_coviddeath_cev-FALSE:
run: r:latest analysis/report_seqtrialcox.R moderna coviddeath cev-FALSE
needs:
- data_selection
- model_seqtrialcox_moderna_coviddeath_cev-FALSE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/coviddeath/cev-FALSE/report_*.csv
svg: output/models/seqtrialcox/moderna/coviddeath/cev-FALSE/report_*.svg
png: output/models/seqtrialcox/moderna/coviddeath/cev-FALSE/report_*.png
model_seqtrialcox_moderna_coviddeath_cev-TRUE:
run: r:latest analysis/model_seqtrialcox.R moderna coviddeath cev-TRUE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/coviddeath/cev-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/coviddeath/cev-TRUE/model_*.txt
csv: output/models/seqtrialcox/moderna/coviddeath/cev-TRUE/model_*.csv
report_seqtrialcox_moderna_coviddeath_cev-TRUE:
run: r:latest analysis/report_seqtrialcox.R moderna coviddeath cev-TRUE
needs:
- data_selection
- model_seqtrialcox_moderna_coviddeath_cev-TRUE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/coviddeath/cev-TRUE/report_*.csv
svg: output/models/seqtrialcox/moderna/coviddeath/cev-TRUE/report_*.svg
png: output/models/seqtrialcox/moderna/coviddeath/cev-TRUE/report_*.png
model_seqtrialcox_moderna_noncoviddeath_cev-FALSE:
run: r:latest analysis/model_seqtrialcox.R moderna noncoviddeath cev-FALSE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/noncoviddeath/cev-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/noncoviddeath/cev-FALSE/model_*.txt
csv: output/models/seqtrialcox/moderna/noncoviddeath/cev-FALSE/model_*.csv
report_seqtrialcox_moderna_noncoviddeath_cev-FALSE:
run: r:latest analysis/report_seqtrialcox.R moderna noncoviddeath cev-FALSE
needs:
- data_selection
- model_seqtrialcox_moderna_noncoviddeath_cev-FALSE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/noncoviddeath/cev-FALSE/report_*.csv
svg: output/models/seqtrialcox/moderna/noncoviddeath/cev-FALSE/report_*.svg
png: output/models/seqtrialcox/moderna/noncoviddeath/cev-FALSE/report_*.png
model_seqtrialcox_moderna_noncoviddeath_cev-TRUE:
run: r:latest analysis/model_seqtrialcox.R moderna noncoviddeath cev-TRUE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/noncoviddeath/cev-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/noncoviddeath/cev-TRUE/model_*.txt
csv: output/models/seqtrialcox/moderna/noncoviddeath/cev-TRUE/model_*.csv
report_seqtrialcox_moderna_noncoviddeath_cev-TRUE:
run: r:latest analysis/report_seqtrialcox.R moderna noncoviddeath cev-TRUE
needs:
- data_selection
- model_seqtrialcox_moderna_noncoviddeath_cev-TRUE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/noncoviddeath/cev-TRUE/report_*.csv
svg: output/models/seqtrialcox/moderna/noncoviddeath/cev-TRUE/report_*.svg
png: output/models/seqtrialcox/moderna/noncoviddeath/cev-TRUE/report_*.png
## ### Models by prior infection (''prior_covid_infection'')
model_seqtrialcox_moderna_postest_prior_covid_infection-FALSE:
run: r:latest analysis/model_seqtrialcox.R moderna postest prior_covid_infection-FALSE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/postest/prior_covid_infection-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/postest/prior_covid_infection-FALSE/model_*.txt
csv: output/models/seqtrialcox/moderna/postest/prior_covid_infection-FALSE/model_*.csv
report_seqtrialcox_moderna_postest_prior_covid_infection-FALSE:
run: r:latest analysis/report_seqtrialcox.R moderna postest prior_covid_infection-FALSE
needs:
- data_selection
- model_seqtrialcox_moderna_postest_prior_covid_infection-FALSE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/postest/prior_covid_infection-FALSE/report_*.csv
svg: output/models/seqtrialcox/moderna/postest/prior_covid_infection-FALSE/report_*.svg
png: output/models/seqtrialcox/moderna/postest/prior_covid_infection-FALSE/report_*.png
model_seqtrialcox_moderna_postest_prior_covid_infection-TRUE:
run: r:latest analysis/model_seqtrialcox.R moderna postest prior_covid_infection-TRUE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/postest/prior_covid_infection-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/postest/prior_covid_infection-TRUE/model_*.txt
csv: output/models/seqtrialcox/moderna/postest/prior_covid_infection-TRUE/model_*.csv
report_seqtrialcox_moderna_postest_prior_covid_infection-TRUE:
run: r:latest analysis/report_seqtrialcox.R moderna postest prior_covid_infection-TRUE
needs:
- data_selection
- model_seqtrialcox_moderna_postest_prior_covid_infection-TRUE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/postest/prior_covid_infection-TRUE/report_*.csv
svg: output/models/seqtrialcox/moderna/postest/prior_covid_infection-TRUE/report_*.svg
png: output/models/seqtrialcox/moderna/postest/prior_covid_infection-TRUE/report_*.png
model_seqtrialcox_moderna_covidemergency_prior_covid_infection-FALSE:
run: r:latest analysis/model_seqtrialcox.R moderna covidemergency prior_covid_infection-FALSE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/covidemergency/prior_covid_infection-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/covidemergency/prior_covid_infection-FALSE/model_*.txt
csv: output/models/seqtrialcox/moderna/covidemergency/prior_covid_infection-FALSE/model_*.csv
report_seqtrialcox_moderna_covidemergency_prior_covid_infection-FALSE:
run: r:latest analysis/report_seqtrialcox.R moderna covidemergency prior_covid_infection-FALSE
needs:
- data_selection
- model_seqtrialcox_moderna_covidemergency_prior_covid_infection-FALSE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/covidemergency/prior_covid_infection-FALSE/report_*.csv
svg: output/models/seqtrialcox/moderna/covidemergency/prior_covid_infection-FALSE/report_*.svg
png: output/models/seqtrialcox/moderna/covidemergency/prior_covid_infection-FALSE/report_*.png
model_seqtrialcox_moderna_covidemergency_prior_covid_infection-TRUE:
run: r:latest analysis/model_seqtrialcox.R moderna covidemergency prior_covid_infection-TRUE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/covidemergency/prior_covid_infection-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/covidemergency/prior_covid_infection-TRUE/model_*.txt
csv: output/models/seqtrialcox/moderna/covidemergency/prior_covid_infection-TRUE/model_*.csv
report_seqtrialcox_moderna_covidemergency_prior_covid_infection-TRUE:
run: r:latest analysis/report_seqtrialcox.R moderna covidemergency prior_covid_infection-TRUE
needs:
- data_selection
- model_seqtrialcox_moderna_covidemergency_prior_covid_infection-TRUE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/covidemergency/prior_covid_infection-TRUE/report_*.csv
svg: output/models/seqtrialcox/moderna/covidemergency/prior_covid_infection-TRUE/report_*.svg
png: output/models/seqtrialcox/moderna/covidemergency/prior_covid_infection-TRUE/report_*.png
model_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-FALSE:
run: r:latest analysis/model_seqtrialcox.R moderna covidadmittedproxy1 prior_covid_infection-FALSE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/covidadmittedproxy1/prior_covid_infection-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/covidadmittedproxy1/prior_covid_infection-FALSE/model_*.txt
csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/prior_covid_infection-FALSE/model_*.csv
report_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-FALSE:
run: r:latest analysis/report_seqtrialcox.R moderna covidadmittedproxy1 prior_covid_infection-FALSE
needs:
- data_selection
- model_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-FALSE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/prior_covid_infection-FALSE/report_*.csv
svg: output/models/seqtrialcox/moderna/covidadmittedproxy1/prior_covid_infection-FALSE/report_*.svg
png: output/models/seqtrialcox/moderna/covidadmittedproxy1/prior_covid_infection-FALSE/report_*.png
model_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-TRUE:
run: r:latest analysis/model_seqtrialcox.R moderna covidadmittedproxy1 prior_covid_infection-TRUE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/covidadmittedproxy1/prior_covid_infection-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/covidadmittedproxy1/prior_covid_infection-TRUE/model_*.txt
csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/prior_covid_infection-TRUE/model_*.csv
report_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-TRUE:
run: r:latest analysis/report_seqtrialcox.R moderna covidadmittedproxy1 prior_covid_infection-TRUE
needs:
- data_selection
- model_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-TRUE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/prior_covid_infection-TRUE/report_*.csv
svg: output/models/seqtrialcox/moderna/covidadmittedproxy1/prior_covid_infection-TRUE/report_*.svg
png: output/models/seqtrialcox/moderna/covidadmittedproxy1/prior_covid_infection-TRUE/report_*.png
model_seqtrialcox_moderna_covidadmitted_prior_covid_infection-FALSE:
run: r:latest analysis/model_seqtrialcox.R moderna covidadmitted prior_covid_infection-FALSE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/covidadmitted/prior_covid_infection-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/covidadmitted/prior_covid_infection-FALSE/model_*.txt
csv: output/models/seqtrialcox/moderna/covidadmitted/prior_covid_infection-FALSE/model_*.csv
report_seqtrialcox_moderna_covidadmitted_prior_covid_infection-FALSE:
run: r:latest analysis/report_seqtrialcox.R moderna covidadmitted prior_covid_infection-FALSE
needs:
- data_selection
- model_seqtrialcox_moderna_covidadmitted_prior_covid_infection-FALSE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/covidadmitted/prior_covid_infection-FALSE/report_*.csv
svg: output/models/seqtrialcox/moderna/covidadmitted/prior_covid_infection-FALSE/report_*.svg
png: output/models/seqtrialcox/moderna/covidadmitted/prior_covid_infection-FALSE/report_*.png
model_seqtrialcox_moderna_covidadmitted_prior_covid_infection-TRUE:
run: r:latest analysis/model_seqtrialcox.R moderna covidadmitted prior_covid_infection-TRUE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/covidadmitted/prior_covid_infection-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/covidadmitted/prior_covid_infection-TRUE/model_*.txt
csv: output/models/seqtrialcox/moderna/covidadmitted/prior_covid_infection-TRUE/model_*.csv
report_seqtrialcox_moderna_covidadmitted_prior_covid_infection-TRUE:
run: r:latest analysis/report_seqtrialcox.R moderna covidadmitted prior_covid_infection-TRUE
needs:
- data_selection
- model_seqtrialcox_moderna_covidadmitted_prior_covid_infection-TRUE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/covidadmitted/prior_covid_infection-TRUE/report_*.csv
svg: output/models/seqtrialcox/moderna/covidadmitted/prior_covid_infection-TRUE/report_*.svg
png: output/models/seqtrialcox/moderna/covidadmitted/prior_covid_infection-TRUE/report_*.png
model_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-FALSE:
run: r:latest analysis/model_seqtrialcox.R moderna noncovidadmitted prior_covid_infection-FALSE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/noncovidadmitted/prior_covid_infection-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/noncovidadmitted/prior_covid_infection-FALSE/model_*.txt
csv: output/models/seqtrialcox/moderna/noncovidadmitted/prior_covid_infection-FALSE/model_*.csv
report_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-FALSE:
run: r:latest analysis/report_seqtrialcox.R moderna noncovidadmitted prior_covid_infection-FALSE
needs:
- data_selection
- model_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-FALSE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/noncovidadmitted/prior_covid_infection-FALSE/report_*.csv
svg: output/models/seqtrialcox/moderna/noncovidadmitted/prior_covid_infection-FALSE/report_*.svg
png: output/models/seqtrialcox/moderna/noncovidadmitted/prior_covid_infection-FALSE/report_*.png
model_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-TRUE:
run: r:latest analysis/model_seqtrialcox.R moderna noncovidadmitted prior_covid_infection-TRUE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/noncovidadmitted/prior_covid_infection-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/noncovidadmitted/prior_covid_infection-TRUE/model_*.txt
csv: output/models/seqtrialcox/moderna/noncovidadmitted/prior_covid_infection-TRUE/model_*.csv
report_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-TRUE:
run: r:latest analysis/report_seqtrialcox.R moderna noncovidadmitted prior_covid_infection-TRUE
needs:
- data_selection
- model_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-TRUE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/noncovidadmitted/prior_covid_infection-TRUE/report_*.csv
svg: output/models/seqtrialcox/moderna/noncovidadmitted/prior_covid_infection-TRUE/report_*.svg
png: output/models/seqtrialcox/moderna/noncovidadmitted/prior_covid_infection-TRUE/report_*.png
model_seqtrialcox_moderna_covidcc_prior_covid_infection-FALSE:
run: r:latest analysis/model_seqtrialcox.R moderna covidcc prior_covid_infection-FALSE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/covidcc/prior_covid_infection-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/covidcc/prior_covid_infection-FALSE/model_*.txt
csv: output/models/seqtrialcox/moderna/covidcc/prior_covid_infection-FALSE/model_*.csv
report_seqtrialcox_moderna_covidcc_prior_covid_infection-FALSE:
run: r:latest analysis/report_seqtrialcox.R moderna covidcc prior_covid_infection-FALSE
needs:
- data_selection
- model_seqtrialcox_moderna_covidcc_prior_covid_infection-FALSE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/covidcc/prior_covid_infection-FALSE/report_*.csv
svg: output/models/seqtrialcox/moderna/covidcc/prior_covid_infection-FALSE/report_*.svg
png: output/models/seqtrialcox/moderna/covidcc/prior_covid_infection-FALSE/report_*.png
model_seqtrialcox_moderna_covidcc_prior_covid_infection-TRUE:
run: r:latest analysis/model_seqtrialcox.R moderna covidcc prior_covid_infection-TRUE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/covidcc/prior_covid_infection-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/covidcc/prior_covid_infection-TRUE/model_*.txt
csv: output/models/seqtrialcox/moderna/covidcc/prior_covid_infection-TRUE/model_*.csv
report_seqtrialcox_moderna_covidcc_prior_covid_infection-TRUE:
run: r:latest analysis/report_seqtrialcox.R moderna covidcc prior_covid_infection-TRUE
needs:
- data_selection
- model_seqtrialcox_moderna_covidcc_prior_covid_infection-TRUE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/covidcc/prior_covid_infection-TRUE/report_*.csv
svg: output/models/seqtrialcox/moderna/covidcc/prior_covid_infection-TRUE/report_*.svg
png: output/models/seqtrialcox/moderna/covidcc/prior_covid_infection-TRUE/report_*.png
model_seqtrialcox_moderna_coviddeath_prior_covid_infection-FALSE:
run: r:latest analysis/model_seqtrialcox.R moderna coviddeath prior_covid_infection-FALSE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/coviddeath/prior_covid_infection-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/coviddeath/prior_covid_infection-FALSE/model_*.txt
csv: output/models/seqtrialcox/moderna/coviddeath/prior_covid_infection-FALSE/model_*.csv
report_seqtrialcox_moderna_coviddeath_prior_covid_infection-FALSE:
run: r:latest analysis/report_seqtrialcox.R moderna coviddeath prior_covid_infection-FALSE
needs:
- data_selection
- model_seqtrialcox_moderna_coviddeath_prior_covid_infection-FALSE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/coviddeath/prior_covid_infection-FALSE/report_*.csv
svg: output/models/seqtrialcox/moderna/coviddeath/prior_covid_infection-FALSE/report_*.svg
png: output/models/seqtrialcox/moderna/coviddeath/prior_covid_infection-FALSE/report_*.png
model_seqtrialcox_moderna_coviddeath_prior_covid_infection-TRUE:
run: r:latest analysis/model_seqtrialcox.R moderna coviddeath prior_covid_infection-TRUE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/coviddeath/prior_covid_infection-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/coviddeath/prior_covid_infection-TRUE/model_*.txt
csv: output/models/seqtrialcox/moderna/coviddeath/prior_covid_infection-TRUE/model_*.csv
report_seqtrialcox_moderna_coviddeath_prior_covid_infection-TRUE:
run: r:latest analysis/report_seqtrialcox.R moderna coviddeath prior_covid_infection-TRUE
needs:
- data_selection
- model_seqtrialcox_moderna_coviddeath_prior_covid_infection-TRUE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/coviddeath/prior_covid_infection-TRUE/report_*.csv
svg: output/models/seqtrialcox/moderna/coviddeath/prior_covid_infection-TRUE/report_*.svg
png: output/models/seqtrialcox/moderna/coviddeath/prior_covid_infection-TRUE/report_*.png
model_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-FALSE:
run: r:latest analysis/model_seqtrialcox.R moderna noncoviddeath prior_covid_infection-FALSE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/noncoviddeath/prior_covid_infection-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/noncoviddeath/prior_covid_infection-FALSE/model_*.txt
csv: output/models/seqtrialcox/moderna/noncoviddeath/prior_covid_infection-FALSE/model_*.csv
report_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-FALSE:
run: r:latest analysis/report_seqtrialcox.R moderna noncoviddeath prior_covid_infection-FALSE
needs:
- data_selection
- model_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-FALSE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/noncoviddeath/prior_covid_infection-FALSE/report_*.csv
svg: output/models/seqtrialcox/moderna/noncoviddeath/prior_covid_infection-FALSE/report_*.svg
png: output/models/seqtrialcox/moderna/noncoviddeath/prior_covid_infection-FALSE/report_*.png
model_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-TRUE:
run: r:latest analysis/model_seqtrialcox.R moderna noncoviddeath prior_covid_infection-TRUE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/noncoviddeath/prior_covid_infection-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/noncoviddeath/prior_covid_infection-TRUE/model_*.txt
csv: output/models/seqtrialcox/moderna/noncoviddeath/prior_covid_infection-TRUE/model_*.csv
report_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-TRUE:
run: r:latest analysis/report_seqtrialcox.R moderna noncoviddeath prior_covid_infection-TRUE
needs:
- data_selection
- model_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-TRUE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/noncoviddeath/prior_covid_infection-TRUE/report_*.csv
svg: output/models/seqtrialcox/moderna/noncoviddeath/prior_covid_infection-TRUE/report_*.svg
png: output/models/seqtrialcox/moderna/noncoviddeath/prior_covid_infection-TRUE/report_*.png
## ### Models by age (''age65plus'')
model_seqtrialcox_moderna_postest_age65plus-FALSE:
run: r:latest analysis/model_seqtrialcox.R moderna postest age65plus-FALSE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/postest/age65plus-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/postest/age65plus-FALSE/model_*.txt
csv: output/models/seqtrialcox/moderna/postest/age65plus-FALSE/model_*.csv
report_seqtrialcox_moderna_postest_age65plus-FALSE:
run: r:latest analysis/report_seqtrialcox.R moderna postest age65plus-FALSE
needs:
- data_selection
- model_seqtrialcox_moderna_postest_age65plus-FALSE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/postest/age65plus-FALSE/report_*.csv
svg: output/models/seqtrialcox/moderna/postest/age65plus-FALSE/report_*.svg
png: output/models/seqtrialcox/moderna/postest/age65plus-FALSE/report_*.png
model_seqtrialcox_moderna_postest_age65plus-TRUE:
run: r:latest analysis/model_seqtrialcox.R moderna postest age65plus-TRUE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/postest/age65plus-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/postest/age65plus-TRUE/model_*.txt
csv: output/models/seqtrialcox/moderna/postest/age65plus-TRUE/model_*.csv
report_seqtrialcox_moderna_postest_age65plus-TRUE:
run: r:latest analysis/report_seqtrialcox.R moderna postest age65plus-TRUE
needs:
- data_selection
- model_seqtrialcox_moderna_postest_age65plus-TRUE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/postest/age65plus-TRUE/report_*.csv
svg: output/models/seqtrialcox/moderna/postest/age65plus-TRUE/report_*.svg
png: output/models/seqtrialcox/moderna/postest/age65plus-TRUE/report_*.png
model_seqtrialcox_moderna_covidemergency_age65plus-FALSE:
run: r:latest analysis/model_seqtrialcox.R moderna covidemergency age65plus-FALSE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/covidemergency/age65plus-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/covidemergency/age65plus-FALSE/model_*.txt
csv: output/models/seqtrialcox/moderna/covidemergency/age65plus-FALSE/model_*.csv
report_seqtrialcox_moderna_covidemergency_age65plus-FALSE:
run: r:latest analysis/report_seqtrialcox.R moderna covidemergency age65plus-FALSE
needs:
- data_selection
- model_seqtrialcox_moderna_covidemergency_age65plus-FALSE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/covidemergency/age65plus-FALSE/report_*.csv
svg: output/models/seqtrialcox/moderna/covidemergency/age65plus-FALSE/report_*.svg
png: output/models/seqtrialcox/moderna/covidemergency/age65plus-FALSE/report_*.png
model_seqtrialcox_moderna_covidemergency_age65plus-TRUE:
run: r:latest analysis/model_seqtrialcox.R moderna covidemergency age65plus-TRUE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/covidemergency/age65plus-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/covidemergency/age65plus-TRUE/model_*.txt
csv: output/models/seqtrialcox/moderna/covidemergency/age65plus-TRUE/model_*.csv
report_seqtrialcox_moderna_covidemergency_age65plus-TRUE:
run: r:latest analysis/report_seqtrialcox.R moderna covidemergency age65plus-TRUE
needs:
- data_selection
- model_seqtrialcox_moderna_covidemergency_age65plus-TRUE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/covidemergency/age65plus-TRUE/report_*.csv
svg: output/models/seqtrialcox/moderna/covidemergency/age65plus-TRUE/report_*.svg
png: output/models/seqtrialcox/moderna/covidemergency/age65plus-TRUE/report_*.png
model_seqtrialcox_moderna_covidadmittedproxy1_age65plus-FALSE:
run: r:latest analysis/model_seqtrialcox.R moderna covidadmittedproxy1 age65plus-FALSE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/covidadmittedproxy1/age65plus-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/covidadmittedproxy1/age65plus-FALSE/model_*.txt
csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/age65plus-FALSE/model_*.csv
report_seqtrialcox_moderna_covidadmittedproxy1_age65plus-FALSE:
run: r:latest analysis/report_seqtrialcox.R moderna covidadmittedproxy1 age65plus-FALSE
needs:
- data_selection
- model_seqtrialcox_moderna_covidadmittedproxy1_age65plus-FALSE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/age65plus-FALSE/report_*.csv
svg: output/models/seqtrialcox/moderna/covidadmittedproxy1/age65plus-FALSE/report_*.svg
png: output/models/seqtrialcox/moderna/covidadmittedproxy1/age65plus-FALSE/report_*.png
model_seqtrialcox_moderna_covidadmittedproxy1_age65plus-TRUE:
run: r:latest analysis/model_seqtrialcox.R moderna covidadmittedproxy1 age65plus-TRUE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/covidadmittedproxy1/age65plus-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/covidadmittedproxy1/age65plus-TRUE/model_*.txt
csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/age65plus-TRUE/model_*.csv
report_seqtrialcox_moderna_covidadmittedproxy1_age65plus-TRUE:
run: r:latest analysis/report_seqtrialcox.R moderna covidadmittedproxy1 age65plus-TRUE
needs:
- data_selection
- model_seqtrialcox_moderna_covidadmittedproxy1_age65plus-TRUE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/age65plus-TRUE/report_*.csv
svg: output/models/seqtrialcox/moderna/covidadmittedproxy1/age65plus-TRUE/report_*.svg
png: output/models/seqtrialcox/moderna/covidadmittedproxy1/age65plus-TRUE/report_*.png
model_seqtrialcox_moderna_covidadmitted_age65plus-FALSE:
run: r:latest analysis/model_seqtrialcox.R moderna covidadmitted age65plus-FALSE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/covidadmitted/age65plus-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/covidadmitted/age65plus-FALSE/model_*.txt
csv: output/models/seqtrialcox/moderna/covidadmitted/age65plus-FALSE/model_*.csv
report_seqtrialcox_moderna_covidadmitted_age65plus-FALSE:
run: r:latest analysis/report_seqtrialcox.R moderna covidadmitted age65plus-FALSE
needs:
- data_selection
- model_seqtrialcox_moderna_covidadmitted_age65plus-FALSE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/covidadmitted/age65plus-FALSE/report_*.csv
svg: output/models/seqtrialcox/moderna/covidadmitted/age65plus-FALSE/report_*.svg
png: output/models/seqtrialcox/moderna/covidadmitted/age65plus-FALSE/report_*.png
model_seqtrialcox_moderna_covidadmitted_age65plus-TRUE:
run: r:latest analysis/model_seqtrialcox.R moderna covidadmitted age65plus-TRUE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/covidadmitted/age65plus-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/covidadmitted/age65plus-TRUE/model_*.txt
csv: output/models/seqtrialcox/moderna/covidadmitted/age65plus-TRUE/model_*.csv
report_seqtrialcox_moderna_covidadmitted_age65plus-TRUE:
run: r:latest analysis/report_seqtrialcox.R moderna covidadmitted age65plus-TRUE
needs:
- data_selection
- model_seqtrialcox_moderna_covidadmitted_age65plus-TRUE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/covidadmitted/age65plus-TRUE/report_*.csv
svg: output/models/seqtrialcox/moderna/covidadmitted/age65plus-TRUE/report_*.svg
png: output/models/seqtrialcox/moderna/covidadmitted/age65plus-TRUE/report_*.png
model_seqtrialcox_moderna_noncovidadmitted_age65plus-FALSE:
run: r:latest analysis/model_seqtrialcox.R moderna noncovidadmitted age65plus-FALSE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/noncovidadmitted/age65plus-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/noncovidadmitted/age65plus-FALSE/model_*.txt
csv: output/models/seqtrialcox/moderna/noncovidadmitted/age65plus-FALSE/model_*.csv
report_seqtrialcox_moderna_noncovidadmitted_age65plus-FALSE:
run: r:latest analysis/report_seqtrialcox.R moderna noncovidadmitted age65plus-FALSE
needs:
- data_selection
- model_seqtrialcox_moderna_noncovidadmitted_age65plus-FALSE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/noncovidadmitted/age65plus-FALSE/report_*.csv
svg: output/models/seqtrialcox/moderna/noncovidadmitted/age65plus-FALSE/report_*.svg
png: output/models/seqtrialcox/moderna/noncovidadmitted/age65plus-FALSE/report_*.png
model_seqtrialcox_moderna_noncovidadmitted_age65plus-TRUE:
run: r:latest analysis/model_seqtrialcox.R moderna noncovidadmitted age65plus-TRUE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/noncovidadmitted/age65plus-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/noncovidadmitted/age65plus-TRUE/model_*.txt
csv: output/models/seqtrialcox/moderna/noncovidadmitted/age65plus-TRUE/model_*.csv
report_seqtrialcox_moderna_noncovidadmitted_age65plus-TRUE:
run: r:latest analysis/report_seqtrialcox.R moderna noncovidadmitted age65plus-TRUE
needs:
- data_selection
- model_seqtrialcox_moderna_noncovidadmitted_age65plus-TRUE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/noncovidadmitted/age65plus-TRUE/report_*.csv
svg: output/models/seqtrialcox/moderna/noncovidadmitted/age65plus-TRUE/report_*.svg
png: output/models/seqtrialcox/moderna/noncovidadmitted/age65plus-TRUE/report_*.png
model_seqtrialcox_moderna_covidcc_age65plus-FALSE:
run: r:latest analysis/model_seqtrialcox.R moderna covidcc age65plus-FALSE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/covidcc/age65plus-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/covidcc/age65plus-FALSE/model_*.txt
csv: output/models/seqtrialcox/moderna/covidcc/age65plus-FALSE/model_*.csv
report_seqtrialcox_moderna_covidcc_age65plus-FALSE:
run: r:latest analysis/report_seqtrialcox.R moderna covidcc age65plus-FALSE
needs:
- data_selection
- model_seqtrialcox_moderna_covidcc_age65plus-FALSE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/covidcc/age65plus-FALSE/report_*.csv
svg: output/models/seqtrialcox/moderna/covidcc/age65plus-FALSE/report_*.svg
png: output/models/seqtrialcox/moderna/covidcc/age65plus-FALSE/report_*.png
model_seqtrialcox_moderna_covidcc_age65plus-TRUE:
run: r:latest analysis/model_seqtrialcox.R moderna covidcc age65plus-TRUE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/covidcc/age65plus-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/covidcc/age65plus-TRUE/model_*.txt
csv: output/models/seqtrialcox/moderna/covidcc/age65plus-TRUE/model_*.csv
report_seqtrialcox_moderna_covidcc_age65plus-TRUE:
run: r:latest analysis/report_seqtrialcox.R moderna covidcc age65plus-TRUE
needs:
- data_selection
- model_seqtrialcox_moderna_covidcc_age65plus-TRUE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/covidcc/age65plus-TRUE/report_*.csv
svg: output/models/seqtrialcox/moderna/covidcc/age65plus-TRUE/report_*.svg
png: output/models/seqtrialcox/moderna/covidcc/age65plus-TRUE/report_*.png
model_seqtrialcox_moderna_coviddeath_age65plus-FALSE:
run: r:latest analysis/model_seqtrialcox.R moderna coviddeath age65plus-FALSE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/coviddeath/age65plus-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/coviddeath/age65plus-FALSE/model_*.txt
csv: output/models/seqtrialcox/moderna/coviddeath/age65plus-FALSE/model_*.csv
report_seqtrialcox_moderna_coviddeath_age65plus-FALSE:
run: r:latest analysis/report_seqtrialcox.R moderna coviddeath age65plus-FALSE
needs:
- data_selection
- model_seqtrialcox_moderna_coviddeath_age65plus-FALSE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/coviddeath/age65plus-FALSE/report_*.csv
svg: output/models/seqtrialcox/moderna/coviddeath/age65plus-FALSE/report_*.svg
png: output/models/seqtrialcox/moderna/coviddeath/age65plus-FALSE/report_*.png
model_seqtrialcox_moderna_coviddeath_age65plus-TRUE:
run: r:latest analysis/model_seqtrialcox.R moderna coviddeath age65plus-TRUE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/coviddeath/age65plus-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/coviddeath/age65plus-TRUE/model_*.txt
csv: output/models/seqtrialcox/moderna/coviddeath/age65plus-TRUE/model_*.csv
report_seqtrialcox_moderna_coviddeath_age65plus-TRUE:
run: r:latest analysis/report_seqtrialcox.R moderna coviddeath age65plus-TRUE
needs:
- data_selection
- model_seqtrialcox_moderna_coviddeath_age65plus-TRUE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/coviddeath/age65plus-TRUE/report_*.csv
svg: output/models/seqtrialcox/moderna/coviddeath/age65plus-TRUE/report_*.svg
png: output/models/seqtrialcox/moderna/coviddeath/age65plus-TRUE/report_*.png
model_seqtrialcox_moderna_noncoviddeath_age65plus-FALSE:
run: r:latest analysis/model_seqtrialcox.R moderna noncoviddeath age65plus-FALSE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/noncoviddeath/age65plus-FALSE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/noncoviddeath/age65plus-FALSE/model_*.txt
csv: output/models/seqtrialcox/moderna/noncoviddeath/age65plus-FALSE/model_*.csv
report_seqtrialcox_moderna_noncoviddeath_age65plus-FALSE:
run: r:latest analysis/report_seqtrialcox.R moderna noncoviddeath age65plus-FALSE
needs:
- data_selection
- model_seqtrialcox_moderna_noncoviddeath_age65plus-FALSE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/noncoviddeath/age65plus-FALSE/report_*.csv
svg: output/models/seqtrialcox/moderna/noncoviddeath/age65plus-FALSE/report_*.svg
png: output/models/seqtrialcox/moderna/noncoviddeath/age65plus-FALSE/report_*.png
model_seqtrialcox_moderna_noncoviddeath_age65plus-TRUE:
run: r:latest analysis/model_seqtrialcox.R moderna noncoviddeath age65plus-TRUE
needs:
- match_seqtrialcox_moderna
- data_selection
- data_process_long
outputs:
highly_sensitive:
rds: output/models/seqtrialcox/moderna/noncoviddeath/age65plus-TRUE/model_*.rds
moderately_sensitive:
txt: output/models/seqtrialcox/moderna/noncoviddeath/age65plus-TRUE/model_*.txt
csv: output/models/seqtrialcox/moderna/noncoviddeath/age65plus-TRUE/model_*.csv
report_seqtrialcox_moderna_noncoviddeath_age65plus-TRUE:
run: r:latest analysis/report_seqtrialcox.R moderna noncoviddeath age65plus-TRUE
needs:
- data_selection
- model_seqtrialcox_moderna_noncoviddeath_age65plus-TRUE
- match_seqtrialcox_moderna
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/moderna/noncoviddeath/age65plus-TRUE/report_*.csv
svg: output/models/seqtrialcox/moderna/noncoviddeath/age65plus-TRUE/report_*.svg
png: output/models/seqtrialcox/moderna/noncoviddeath/age65plus-TRUE/report_*.png
## # # # # # # # # # # # # # # # # # # #
## Combine models across treatments and outcomes
## # # # # # # # # # # # # # # # # # # #
combine_model_none:
run: r:latest analysis/combine_model.R none
needs:
- match_seqtrialcox_pfizer
- match_seqtrialcox_moderna
- model_seqtrialcox_pfizer_postest_none
- report_seqtrialcox_pfizer_postest_none
- model_seqtrialcox_pfizer_covidemergency_none
- report_seqtrialcox_pfizer_covidemergency_none
- model_seqtrialcox_pfizer_covidadmittedproxy1_none
- report_seqtrialcox_pfizer_covidadmittedproxy1_none
- model_seqtrialcox_pfizer_covidadmitted_none
- report_seqtrialcox_pfizer_covidadmitted_none
- model_seqtrialcox_pfizer_noncovidadmitted_none
- report_seqtrialcox_pfizer_noncovidadmitted_none
- model_seqtrialcox_pfizer_coviddeath_none
- report_seqtrialcox_pfizer_coviddeath_none
- model_seqtrialcox_pfizer_noncoviddeath_none
- report_seqtrialcox_pfizer_noncoviddeath_none
- model_seqtrialcox_moderna_postest_none
- report_seqtrialcox_moderna_postest_none
- model_seqtrialcox_moderna_covidemergency_none
- report_seqtrialcox_moderna_covidemergency_none
- model_seqtrialcox_moderna_covidadmittedproxy1_none
- report_seqtrialcox_moderna_covidadmittedproxy1_none
- model_seqtrialcox_moderna_covidadmitted_none
- report_seqtrialcox_moderna_covidadmitted_none
- model_seqtrialcox_moderna_noncovidadmitted_none
- report_seqtrialcox_moderna_noncovidadmitted_none
- model_seqtrialcox_moderna_coviddeath_none
- report_seqtrialcox_moderna_coviddeath_none
- model_seqtrialcox_moderna_noncoviddeath_none
- report_seqtrialcox_moderna_noncoviddeath_none
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/combined/none/*.csv
png: output/models/seqtrialcox/combined/none/*.png
pdf: output/models/seqtrialcox/combined/none/*.pdf
svg: output/models/seqtrialcox/combined/none/*.svg
html: output/models/seqtrialcox/combined/none/*.html
combine_model_vax12_type:
run: r:latest analysis/combine_model.R vax12_type
needs:
- match_seqtrialcox_pfizer
- match_seqtrialcox_moderna
- model_seqtrialcox_pfizer_postest_vax12_type-pfizer-pfizer
- report_seqtrialcox_pfizer_postest_vax12_type-pfizer-pfizer
- model_seqtrialcox_pfizer_covidemergency_vax12_type-pfizer-pfizer
- report_seqtrialcox_pfizer_covidemergency_vax12_type-pfizer-pfizer
- model_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-pfizer-pfizer
- report_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-pfizer-pfizer
- model_seqtrialcox_pfizer_covidadmitted_vax12_type-pfizer-pfizer
- report_seqtrialcox_pfizer_covidadmitted_vax12_type-pfizer-pfizer
- model_seqtrialcox_pfizer_noncovidadmitted_vax12_type-pfizer-pfizer
- report_seqtrialcox_pfizer_noncovidadmitted_vax12_type-pfizer-pfizer
- model_seqtrialcox_pfizer_coviddeath_vax12_type-pfizer-pfizer
- report_seqtrialcox_pfizer_coviddeath_vax12_type-pfizer-pfizer
- model_seqtrialcox_pfizer_noncoviddeath_vax12_type-pfizer-pfizer
- report_seqtrialcox_pfizer_noncoviddeath_vax12_type-pfizer-pfizer
- model_seqtrialcox_moderna_postest_vax12_type-pfizer-pfizer
- report_seqtrialcox_moderna_postest_vax12_type-pfizer-pfizer
- model_seqtrialcox_moderna_covidemergency_vax12_type-pfizer-pfizer
- report_seqtrialcox_moderna_covidemergency_vax12_type-pfizer-pfizer
- model_seqtrialcox_moderna_covidadmittedproxy1_vax12_type-pfizer-pfizer
- report_seqtrialcox_moderna_covidadmittedproxy1_vax12_type-pfizer-pfizer
- model_seqtrialcox_moderna_covidadmitted_vax12_type-pfizer-pfizer
- report_seqtrialcox_moderna_covidadmitted_vax12_type-pfizer-pfizer
- model_seqtrialcox_moderna_noncovidadmitted_vax12_type-pfizer-pfizer
- report_seqtrialcox_moderna_noncovidadmitted_vax12_type-pfizer-pfizer
- model_seqtrialcox_moderna_coviddeath_vax12_type-pfizer-pfizer
- report_seqtrialcox_moderna_coviddeath_vax12_type-pfizer-pfizer
- model_seqtrialcox_moderna_noncoviddeath_vax12_type-pfizer-pfizer
- report_seqtrialcox_moderna_noncoviddeath_vax12_type-pfizer-pfizer
- model_seqtrialcox_pfizer_postest_vax12_type-az-az
- report_seqtrialcox_pfizer_postest_vax12_type-az-az
- model_seqtrialcox_pfizer_covidemergency_vax12_type-az-az
- report_seqtrialcox_pfizer_covidemergency_vax12_type-az-az
- model_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-az-az
- report_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-az-az
- model_seqtrialcox_pfizer_covidadmitted_vax12_type-az-az
- report_seqtrialcox_pfizer_covidadmitted_vax12_type-az-az
- model_seqtrialcox_pfizer_noncovidadmitted_vax12_type-az-az
- report_seqtrialcox_pfizer_noncovidadmitted_vax12_type-az-az
- model_seqtrialcox_pfizer_coviddeath_vax12_type-az-az
- report_seqtrialcox_pfizer_coviddeath_vax12_type-az-az
- model_seqtrialcox_pfizer_noncoviddeath_vax12_type-az-az
- report_seqtrialcox_pfizer_noncoviddeath_vax12_type-az-az
- model_seqtrialcox_moderna_postest_vax12_type-az-az
- report_seqtrialcox_moderna_postest_vax12_type-az-az
- model_seqtrialcox_moderna_covidemergency_vax12_type-az-az
- report_seqtrialcox_moderna_covidemergency_vax12_type-az-az
- model_seqtrialcox_moderna_covidadmittedproxy1_vax12_type-az-az
- report_seqtrialcox_moderna_covidadmittedproxy1_vax12_type-az-az
- model_seqtrialcox_moderna_covidadmitted_vax12_type-az-az
- report_seqtrialcox_moderna_covidadmitted_vax12_type-az-az
- model_seqtrialcox_moderna_noncovidadmitted_vax12_type-az-az
- report_seqtrialcox_moderna_noncovidadmitted_vax12_type-az-az
- model_seqtrialcox_moderna_coviddeath_vax12_type-az-az
- report_seqtrialcox_moderna_coviddeath_vax12_type-az-az
- model_seqtrialcox_moderna_noncoviddeath_vax12_type-az-az
- report_seqtrialcox_moderna_noncoviddeath_vax12_type-az-az
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/combined/vax12_type/*.csv
png: output/models/seqtrialcox/combined/vax12_type/*.png
pdf: output/models/seqtrialcox/combined/vax12_type/*.pdf
svg: output/models/seqtrialcox/combined/vax12_type/*.svg
html: output/models/seqtrialcox/combined/vax12_type/*.html
combine_model_cev:
run: r:latest analysis/combine_model.R cev
needs:
- match_seqtrialcox_pfizer
- match_seqtrialcox_moderna
- model_seqtrialcox_pfizer_postest_cev-FALSE
- report_seqtrialcox_pfizer_postest_cev-FALSE
- model_seqtrialcox_pfizer_covidemergency_cev-FALSE
- report_seqtrialcox_pfizer_covidemergency_cev-FALSE
- model_seqtrialcox_pfizer_covidadmittedproxy1_cev-FALSE
- report_seqtrialcox_pfizer_covidadmittedproxy1_cev-FALSE
- model_seqtrialcox_pfizer_covidadmitted_cev-FALSE
- report_seqtrialcox_pfizer_covidadmitted_cev-FALSE
- model_seqtrialcox_pfizer_noncovidadmitted_cev-FALSE
- report_seqtrialcox_pfizer_noncovidadmitted_cev-FALSE
- model_seqtrialcox_pfizer_coviddeath_cev-FALSE
- report_seqtrialcox_pfizer_coviddeath_cev-FALSE
- model_seqtrialcox_pfizer_noncoviddeath_cev-FALSE
- report_seqtrialcox_pfizer_noncoviddeath_cev-FALSE
- model_seqtrialcox_moderna_postest_cev-FALSE
- report_seqtrialcox_moderna_postest_cev-FALSE
- model_seqtrialcox_moderna_covidemergency_cev-FALSE
- report_seqtrialcox_moderna_covidemergency_cev-FALSE
- model_seqtrialcox_moderna_covidadmittedproxy1_cev-FALSE
- report_seqtrialcox_moderna_covidadmittedproxy1_cev-FALSE
- model_seqtrialcox_moderna_covidadmitted_cev-FALSE
- report_seqtrialcox_moderna_covidadmitted_cev-FALSE
- model_seqtrialcox_moderna_noncovidadmitted_cev-FALSE
- report_seqtrialcox_moderna_noncovidadmitted_cev-FALSE
- model_seqtrialcox_moderna_coviddeath_cev-FALSE
- report_seqtrialcox_moderna_coviddeath_cev-FALSE
- model_seqtrialcox_moderna_noncoviddeath_cev-FALSE
- report_seqtrialcox_moderna_noncoviddeath_cev-FALSE
- model_seqtrialcox_pfizer_postest_cev-TRUE
- report_seqtrialcox_pfizer_postest_cev-TRUE
- model_seqtrialcox_pfizer_covidemergency_cev-TRUE
- report_seqtrialcox_pfizer_covidemergency_cev-TRUE
- model_seqtrialcox_pfizer_covidadmittedproxy1_cev-TRUE
- report_seqtrialcox_pfizer_covidadmittedproxy1_cev-TRUE
- model_seqtrialcox_pfizer_covidadmitted_cev-TRUE
- report_seqtrialcox_pfizer_covidadmitted_cev-TRUE
- model_seqtrialcox_pfizer_noncovidadmitted_cev-TRUE
- report_seqtrialcox_pfizer_noncovidadmitted_cev-TRUE
- model_seqtrialcox_pfizer_coviddeath_cev-TRUE
- report_seqtrialcox_pfizer_coviddeath_cev-TRUE
- model_seqtrialcox_pfizer_noncoviddeath_cev-TRUE
- report_seqtrialcox_pfizer_noncoviddeath_cev-TRUE
- model_seqtrialcox_moderna_postest_cev-TRUE
- report_seqtrialcox_moderna_postest_cev-TRUE
- model_seqtrialcox_moderna_covidemergency_cev-TRUE
- report_seqtrialcox_moderna_covidemergency_cev-TRUE
- model_seqtrialcox_moderna_covidadmittedproxy1_cev-TRUE
- report_seqtrialcox_moderna_covidadmittedproxy1_cev-TRUE
- model_seqtrialcox_moderna_covidadmitted_cev-TRUE
- report_seqtrialcox_moderna_covidadmitted_cev-TRUE
- model_seqtrialcox_moderna_noncovidadmitted_cev-TRUE
- report_seqtrialcox_moderna_noncovidadmitted_cev-TRUE
- model_seqtrialcox_moderna_coviddeath_cev-TRUE
- report_seqtrialcox_moderna_coviddeath_cev-TRUE
- model_seqtrialcox_moderna_noncoviddeath_cev-TRUE
- report_seqtrialcox_moderna_noncoviddeath_cev-TRUE
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/combined/cev/*.csv
png: output/models/seqtrialcox/combined/cev/*.png
pdf: output/models/seqtrialcox/combined/cev/*.pdf
svg: output/models/seqtrialcox/combined/cev/*.svg
html: output/models/seqtrialcox/combined/cev/*.html
combine_model_age65plus:
run: r:latest analysis/combine_model.R age65plus
needs:
- match_seqtrialcox_pfizer
- match_seqtrialcox_moderna
- model_seqtrialcox_pfizer_postest_age65plus-FALSE
- report_seqtrialcox_pfizer_postest_age65plus-FALSE
- model_seqtrialcox_pfizer_covidemergency_age65plus-FALSE
- report_seqtrialcox_pfizer_covidemergency_age65plus-FALSE
- model_seqtrialcox_pfizer_covidadmittedproxy1_age65plus-FALSE
- report_seqtrialcox_pfizer_covidadmittedproxy1_age65plus-FALSE
- model_seqtrialcox_pfizer_covidadmitted_age65plus-FALSE
- report_seqtrialcox_pfizer_covidadmitted_age65plus-FALSE
- model_seqtrialcox_pfizer_noncovidadmitted_age65plus-FALSE
- report_seqtrialcox_pfizer_noncovidadmitted_age65plus-FALSE
- model_seqtrialcox_pfizer_coviddeath_age65plus-FALSE
- report_seqtrialcox_pfizer_coviddeath_age65plus-FALSE
- model_seqtrialcox_pfizer_noncoviddeath_age65plus-FALSE
- report_seqtrialcox_pfizer_noncoviddeath_age65plus-FALSE
- model_seqtrialcox_moderna_postest_age65plus-FALSE
- report_seqtrialcox_moderna_postest_age65plus-FALSE
- model_seqtrialcox_moderna_covidemergency_age65plus-FALSE
- report_seqtrialcox_moderna_covidemergency_age65plus-FALSE
- model_seqtrialcox_moderna_covidadmittedproxy1_age65plus-FALSE
- report_seqtrialcox_moderna_covidadmittedproxy1_age65plus-FALSE
- model_seqtrialcox_moderna_covidadmitted_age65plus-FALSE
- report_seqtrialcox_moderna_covidadmitted_age65plus-FALSE
- model_seqtrialcox_moderna_noncovidadmitted_age65plus-FALSE
- report_seqtrialcox_moderna_noncovidadmitted_age65plus-FALSE
- model_seqtrialcox_moderna_coviddeath_age65plus-FALSE
- report_seqtrialcox_moderna_coviddeath_age65plus-FALSE
- model_seqtrialcox_moderna_noncoviddeath_age65plus-FALSE
- report_seqtrialcox_moderna_noncoviddeath_age65plus-FALSE
- model_seqtrialcox_pfizer_postest_age65plus-TRUE
- report_seqtrialcox_pfizer_postest_age65plus-TRUE
- model_seqtrialcox_pfizer_covidemergency_age65plus-TRUE
- report_seqtrialcox_pfizer_covidemergency_age65plus-TRUE
- model_seqtrialcox_pfizer_covidadmittedproxy1_age65plus-TRUE
- report_seqtrialcox_pfizer_covidadmittedproxy1_age65plus-TRUE
- model_seqtrialcox_pfizer_covidadmitted_age65plus-TRUE
- report_seqtrialcox_pfizer_covidadmitted_age65plus-TRUE
- model_seqtrialcox_pfizer_noncovidadmitted_age65plus-TRUE
- report_seqtrialcox_pfizer_noncovidadmitted_age65plus-TRUE
- model_seqtrialcox_pfizer_coviddeath_age65plus-TRUE
- report_seqtrialcox_pfizer_coviddeath_age65plus-TRUE
- model_seqtrialcox_pfizer_noncoviddeath_age65plus-TRUE
- report_seqtrialcox_pfizer_noncoviddeath_age65plus-TRUE
- model_seqtrialcox_moderna_postest_age65plus-TRUE
- report_seqtrialcox_moderna_postest_age65plus-TRUE
- model_seqtrialcox_moderna_covidemergency_age65plus-TRUE
- report_seqtrialcox_moderna_covidemergency_age65plus-TRUE
- model_seqtrialcox_moderna_covidadmittedproxy1_age65plus-TRUE
- report_seqtrialcox_moderna_covidadmittedproxy1_age65plus-TRUE
- model_seqtrialcox_moderna_covidadmitted_age65plus-TRUE
- report_seqtrialcox_moderna_covidadmitted_age65plus-TRUE
- model_seqtrialcox_moderna_noncovidadmitted_age65plus-TRUE
- report_seqtrialcox_moderna_noncovidadmitted_age65plus-TRUE
- model_seqtrialcox_moderna_coviddeath_age65plus-TRUE
- report_seqtrialcox_moderna_coviddeath_age65plus-TRUE
- model_seqtrialcox_moderna_noncoviddeath_age65plus-TRUE
- report_seqtrialcox_moderna_noncoviddeath_age65plus-TRUE
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/combined/age65plus/*.csv
png: output/models/seqtrialcox/combined/age65plus/*.png
pdf: output/models/seqtrialcox/combined/age65plus/*.pdf
svg: output/models/seqtrialcox/combined/age65plus/*.svg
html: output/models/seqtrialcox/combined/age65plus/*.html
combine_model_prior_covid_infection:
run: r:latest analysis/combine_model.R prior_covid_infection
needs:
- match_seqtrialcox_pfizer
- match_seqtrialcox_moderna
- model_seqtrialcox_pfizer_postest_prior_covid_infection-FALSE
- report_seqtrialcox_pfizer_postest_prior_covid_infection-FALSE
- model_seqtrialcox_pfizer_covidemergency_prior_covid_infection-FALSE
- report_seqtrialcox_pfizer_covidemergency_prior_covid_infection-FALSE
- model_seqtrialcox_pfizer_covidadmittedproxy1_prior_covid_infection-FALSE
- report_seqtrialcox_pfizer_covidadmittedproxy1_prior_covid_infection-FALSE
- model_seqtrialcox_pfizer_covidadmitted_prior_covid_infection-FALSE
- report_seqtrialcox_pfizer_covidadmitted_prior_covid_infection-FALSE
- model_seqtrialcox_pfizer_noncovidadmitted_prior_covid_infection-FALSE
- report_seqtrialcox_pfizer_noncovidadmitted_prior_covid_infection-FALSE
- model_seqtrialcox_pfizer_coviddeath_prior_covid_infection-FALSE
- report_seqtrialcox_pfizer_coviddeath_prior_covid_infection-FALSE
- model_seqtrialcox_pfizer_noncoviddeath_prior_covid_infection-FALSE
- report_seqtrialcox_pfizer_noncoviddeath_prior_covid_infection-FALSE
- model_seqtrialcox_moderna_postest_prior_covid_infection-FALSE
- report_seqtrialcox_moderna_postest_prior_covid_infection-FALSE
- model_seqtrialcox_moderna_covidemergency_prior_covid_infection-FALSE
- report_seqtrialcox_moderna_covidemergency_prior_covid_infection-FALSE
- model_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-FALSE
- report_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-FALSE
- model_seqtrialcox_moderna_covidadmitted_prior_covid_infection-FALSE
- report_seqtrialcox_moderna_covidadmitted_prior_covid_infection-FALSE
- model_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-FALSE
- report_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-FALSE
- model_seqtrialcox_moderna_coviddeath_prior_covid_infection-FALSE
- report_seqtrialcox_moderna_coviddeath_prior_covid_infection-FALSE
- model_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-FALSE
- report_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-FALSE
- model_seqtrialcox_pfizer_postest_prior_covid_infection-TRUE
- report_seqtrialcox_pfizer_postest_prior_covid_infection-TRUE
- model_seqtrialcox_pfizer_covidemergency_prior_covid_infection-TRUE
- report_seqtrialcox_pfizer_covidemergency_prior_covid_infection-TRUE
- model_seqtrialcox_pfizer_covidadmittedproxy1_prior_covid_infection-TRUE
- report_seqtrialcox_pfizer_covidadmittedproxy1_prior_covid_infection-TRUE
- model_seqtrialcox_pfizer_covidadmitted_prior_covid_infection-TRUE
- report_seqtrialcox_pfizer_covidadmitted_prior_covid_infection-TRUE
- model_seqtrialcox_pfizer_noncovidadmitted_prior_covid_infection-TRUE
- report_seqtrialcox_pfizer_noncovidadmitted_prior_covid_infection-TRUE
- model_seqtrialcox_pfizer_coviddeath_prior_covid_infection-TRUE
- report_seqtrialcox_pfizer_coviddeath_prior_covid_infection-TRUE
- model_seqtrialcox_pfizer_noncoviddeath_prior_covid_infection-TRUE
- report_seqtrialcox_pfizer_noncoviddeath_prior_covid_infection-TRUE
- model_seqtrialcox_moderna_postest_prior_covid_infection-TRUE
- report_seqtrialcox_moderna_postest_prior_covid_infection-TRUE
- model_seqtrialcox_moderna_covidemergency_prior_covid_infection-TRUE
- report_seqtrialcox_moderna_covidemergency_prior_covid_infection-TRUE
- model_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-TRUE
- report_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-TRUE
- model_seqtrialcox_moderna_covidadmitted_prior_covid_infection-TRUE
- report_seqtrialcox_moderna_covidadmitted_prior_covid_infection-TRUE
- model_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-TRUE
- report_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-TRUE
- model_seqtrialcox_moderna_coviddeath_prior_covid_infection-TRUE
- report_seqtrialcox_moderna_coviddeath_prior_covid_infection-TRUE
- model_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-TRUE
- report_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-TRUE
outputs:
moderately_sensitive:
csv: output/models/seqtrialcox/combined/prior_covid_infection/*.csv
png: output/models/seqtrialcox/combined/prior_covid_infection/*.png
pdf: output/models/seqtrialcox/combined/prior_covid_infection/*.pdf
svg: output/models/seqtrialcox/combined/prior_covid_infection/*.svg
html: output/models/seqtrialcox/combined/prior_covid_infection/*.html
## # # # # # # # # # # # # # # # # # # #
## Manuscript
## # # # # # # # # # # # # # # # # # # #
release_objects:
run: r:latest analysis/release_objects.R
needs:
- data_selection
- combine_match
- combine_model_none
- combine_model_vax12_type
- combine_model_cev
- combine_model_age65plus
- combine_model_prior_covid_infection
outputs:
moderately_sensitive:
csv: output/release-objects/*.csv
txt: output/files-for-release.txt
csvsubgroup: output/release-objects/*/*.csv
Timeline
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Created:
-
Started:
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Finished:
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Runtime: 25:24:48
These timestamps are generated and stored using the UTC timezone on the TPP backend.
Job information
- Status
-
Succeeded
- Backend
- TPP
- Workspace
- booster-effectiveness_main
- Requested by
- Will Hulme
- Branch
- main
- Force run dependencies
- No
- Git commit hash
- 1fa79b8
- Requested actions
-
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model_seqtrialcox_pfizer_postest_cev-FALSE
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report_seqtrialcox_pfizer_postest_cev-FALSE
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model_seqtrialcox_pfizer_postest_cev-TRUE
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report_seqtrialcox_pfizer_postest_cev-TRUE
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model_seqtrialcox_pfizer_covidemergency_cev-FALSE
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report_seqtrialcox_pfizer_covidemergency_cev-FALSE
-
model_seqtrialcox_pfizer_covidemergency_cev-TRUE
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report_seqtrialcox_pfizer_covidemergency_cev-TRUE
-
model_seqtrialcox_pfizer_covidadmittedproxy1_cev-FALSE
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report_seqtrialcox_pfizer_covidadmittedproxy1_cev-FALSE
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model_seqtrialcox_pfizer_covidadmittedproxy1_cev-TRUE
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report_seqtrialcox_pfizer_covidadmittedproxy1_cev-TRUE
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model_seqtrialcox_pfizer_covidadmitted_cev-FALSE
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report_seqtrialcox_pfizer_covidadmitted_cev-FALSE
-
model_seqtrialcox_pfizer_covidadmitted_cev-TRUE
-
report_seqtrialcox_pfizer_covidadmitted_cev-TRUE
-
model_seqtrialcox_pfizer_noncovidadmitted_cev-FALSE
-
report_seqtrialcox_pfizer_noncovidadmitted_cev-FALSE
-
model_seqtrialcox_pfizer_noncovidadmitted_cev-TRUE
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report_seqtrialcox_pfizer_noncovidadmitted_cev-TRUE
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model_seqtrialcox_pfizer_covidcc_cev-FALSE
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report_seqtrialcox_pfizer_covidcc_cev-FALSE
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model_seqtrialcox_pfizer_covidcc_cev-TRUE
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report_seqtrialcox_pfizer_covidcc_cev-TRUE
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model_seqtrialcox_pfizer_coviddeath_cev-FALSE
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report_seqtrialcox_pfizer_coviddeath_cev-FALSE
-
model_seqtrialcox_pfizer_coviddeath_cev-TRUE
-
report_seqtrialcox_pfizer_coviddeath_cev-TRUE
-
model_seqtrialcox_pfizer_noncoviddeath_cev-FALSE
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report_seqtrialcox_pfizer_noncoviddeath_cev-FALSE
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model_seqtrialcox_pfizer_noncoviddeath_cev-TRUE
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report_seqtrialcox_pfizer_noncoviddeath_cev-TRUE
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