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Job request: 13375

Organisation:
Bennett Institute
Workspace:
vaccine-effectiveness-3dose
ID:
4gzcmkkyq64kepec
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Elsie Horne requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    process_controlfinal_mrna
    Status:
    Status: Succeeded
    Job identifier:
    ynleiwignjta3nus
  • Action:
    design
    Status:
    Status: Succeeded
    Job identifier:
    s3cjto2ndd43nv5t
  • Action:
    extract_covidtests_mrna_treated
    Status:
    Status: Failed
    Job identifier:
    3czp2tn26vumaafc
    Error:
    nonzero_exit: Job exited with error code 5: Something went wrong with the database, please contact tech support
  • Action:
    extract_covidtests_mrna_control
    Status:
    Status: Failed
    Job identifier:
    4cxkz3kzvno4nldt
    Error:
    nonzero_exit: Job exited with error code 5: Something went wrong with the database, please contact tech support
  • Action:
    process_covidtests_mrna
    Status:
    Status: Failed
    Job identifier:
    zshp5guvieqrcmky
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    summarise_covidtests_mrna
    Status:
    Status: Failed
    Job identifier:
    k5mzqj7knhunre3t
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:45:11

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
vaccine-effectiveness-3dose
Requested by
Elsie Horne
Branch
main
Force run dependencies
No
Git commit hash
b510d67
Requested actions
  • design
  • process_controlfinal_mrna
  • extract_covidtests_mrna_treated
  • extract_covidtests_mrna_control
  • process_covidtests_mrna
  • summarise_covidtests_mrna

Code comparison

Compare the code used in this job request