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Job request: 21629

Organisation:
Bennett Institute
Workspace:
vaccine-effectiveness-3dose
ID:
g2u4adhcxrwda4q5
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Will Hulme requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    cinc_dose4_mrna
    Status:
    Succeeded
    Job identifier:
    w5l2qprceaeetzl6
  • Action:
    coverage_mrna
    Status:
    Succeeded
    Job identifier:
    fqw6rfcwsger7tjr
  • Action:
    cox_adj_mrna_agegroup_ignore_noncoviddeath
    Status:
    Succeeded
    Job identifier:
    lrjdjhuomjtze4ot
  • Action:
    cox_adj_mrna_all_ignore_cancerdeath
    Status:
    Succeeded
    Job identifier:
    k722xauwfwluk6fp
  • Action:
    cox_adj_mrna_all_ignore_covidadmitted
    Status:
    Succeeded
    Job identifier:
    sgayfbvrzbhbf3n2
  • Action:
    cox_adj_mrna_all_ignore_coviddeath
    Status:
    Succeeded
    Job identifier:
    qb4drhoa3l2idioi
  • Action:
    flowchart
    Status:
    Succeeded
    Job identifier:
    alzlschl2hzl7jam
  • Action:
    investigate_nonpos_tte_mrna
    Status:
    Succeeded
    Job identifier:
    sjginieooj54lehw
  • Action:
    table1_mrna
    Status:
    Succeeded
    Job identifier:
    gusivhyw76wdumlg
  • Action:
    km_mrna_all_split_coviddeath
    Status:
    Succeeded
    Job identifier:
    ciqpgx55w7gc3yv4
  • Action:
    cox_adj_mrna_all_ignore_cvddeath
    Status:
    Succeeded
    Job identifier:
    hhobsbqkn6a3bgi2
  • Action:
    cox_adj_mrna_all_ignore_fracture
    Status:
    Succeeded
    Job identifier:
    i55oraj25b5en24n
  • Action:
    cox_adj_mrna_all_ignore_noncoviddeath
    Status:
    Succeeded
    Job identifier:
    hfzutgvxxidfqone
  • Action:
    cox_adj_mrna_all_ignore_postest
    Status:
    Succeeded
    Job identifier:
    pltpqip3koq3fobu
  • Action:
    cox_adj_mrna_all_restrict_covidadmitted
    Status:
    Succeeded
    Job identifier:
    7347fvsbwhfpgvnt
  • Action:
    cox_adj_mrna_all_restrict_noncoviddeath
    Status:
    Succeeded
    Job identifier:
    cgrhbb4m7yzhud57
  • Action:
    cox_adj_mrna_all_restrict_postest
    Status:
    Succeeded
    Job identifier:
    zcna6yupzt6r3j2x
  • Action:
    cox_adj_mrna_all_split_cancerdeath
    Status:
    Failed
    Job identifier:
    gngehctweprilyam
    Error:
    nonzero_exit: Job exited with an error: Job ran out of memory (limit was 128.00GB)
  • Action:
    extract_covidtests_mrna_control
    Status:
    Succeeded
    Job identifier:
    7b566wkoor47h2ii
  • Action:
    cox_adj_mrna_all_split_covidadmitted
    Status:
    Failed
    Job identifier:
    hsslattrz6wzfb22
    Error:
    nonzero_exit: Job exited with an error: Job ran out of memory (limit was 128.00GB)
  • Action:
    cox_adj_mrna_all_split_coviddeath
    Status:
    Succeeded
    Job identifier:
    ucx3uln5n2dzxgjw
  • Action:
    cox_adj_mrna_all_split_cvddeath
    Status:
    Failed
    Job identifier:
    kr7hehnrljn4y6sc
    Error:
    nonzero_exit: Job exited with an error: Job ran out of memory (limit was 128.00GB)
  • Action:
    extract_covidtests_mrna_treated
    Status:
    Succeeded
    Job identifier:
    ewcfhjpwrmh3bxrq
  • Action:
    cox_adj_mrna_all_split_fracture
    Status:
    Failed
    Job identifier:
    3zyqldwwfkogjyzc
    Error:
    nonzero_exit: Job exited with an error: Job ran out of memory (limit was 128.00GB)
  • Action:
    cox_adj_mrna_all_split_noncoviddeath
    Status:
    Failed
    Job identifier:
    xbkbkzn7katq2i3r
    Error:
    nonzero_exit: Job exited with an error: Job ran out of memory (limit was 128.00GB)
  • Action:
    process_covidtests_mrna
    Status:
    Succeeded
    Job identifier:
    r3kq3wjvg7kt7gld
  • Action:
    cox_adj_mrna_all_split_postest
    Status:
    Failed
    Job identifier:
    nsqyqywdysf2na3k
    Error:
    nonzero_exit: Job exited with an error: Job ran out of memory (limit was 128.00GB)
  • Action:
    cox_adj_mrna_cev_cv_ignore_covidadmitted_overall
    Status:
    Succeeded
    Job identifier:
    ijkc7w7b525zttc7
  • Action:
    cox_adj_mrna_cev_cv_ignore_fracture_overall
    Status:
    Succeeded
    Job identifier:
    ic6q3a6qnkypnihu
  • Action:
    cox_adj_mrna_cev_cv_ignore_noncoviddeath
    Status:
    Succeeded
    Job identifier:
    uuzvog56hblcavpy
  • Action:
    cox_adj_mrna_prior_covid_infection_ignore_coviddeath_overall
    Status:
    Succeeded
    Job identifier:
    3mox3tn7uxplc6q7
  • Action:
    cox_adj_mrna_vax12_type_ignore_cancerdeath
    Status:
    Failed
    Job identifier:
    rlfaxmfimf5tazkl
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    cox_adj_mrna_vax12_type_ignore_cancerdeath_overall
    Status:
    Failed
    Job identifier:
    tycehgyoq7xyw75r
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    cox_adj_mrna_vax12_type_ignore_covidadmitted
    Status:
    Failed
    Job identifier:
    bx3l2jqkinaxq4ee
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    cox_adj_mrna_vax12_type_ignore_covidadmitted_overall
    Status:
    Failed
    Job identifier:
    ngogzimqcrojlgzr
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    cox_adj_mrna_vax12_type_ignore_coviddeath
    Status:
    Failed
    Job identifier:
    6wvlvumyqksv3ok3
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    cox_adj_mrna_vax12_type_ignore_coviddeath_overall
    Status:
    Failed
    Job identifier:
    lvyb3a6ytiiksrcv
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    cox_adj_mrna_vax12_type_ignore_cvddeath
    Status:
    Failed
    Job identifier:
    3qp2rhs6a5mpgoqg
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    cox_adj_mrna_vax12_type_ignore_cvddeath_overall
    Status:
    Failed
    Job identifier:
    q4qvfj6whpaqhqyj
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    cox_adj_mrna_vax12_type_ignore_fracture
    Status:
    Failed
    Job identifier:
    6lc2l76qoxv6grdt
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    cox_adj_mrna_vax12_type_ignore_fracture_overall
    Status:
    Failed
    Job identifier:
    ckhilr5pj6z3c7ud
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    cox_adj_mrna_vax12_type_ignore_noncoviddeath
    Status:
    Failed
    Job identifier:
    la5xyexnj2g2g53f
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    cox_adj_mrna_vax12_type_ignore_noncoviddeath_overall
    Status:
    Failed
    Job identifier:
    sjrkhr6hm3qewzcr
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    cox_adj_mrna_vax12_type_ignore_postest
    Status:
    Failed
    Job identifier:
    t7qw3ryrvqemsjpb
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    cox_adj_mrna_vax12_type_ignore_postest_overall
    Status:
    Failed
    Job identifier:
    upyjzdfdr6pqueke
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    cox_unadj_mrna_vax12_type_ignore_cancerdeath
    Status:
    Failed
    Job identifier:
    khnkhagcpowi67qo
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    cox_unadj_mrna_vax12_type_ignore_cancerdeath_overall
    Status:
    Failed
    Job identifier:
    nomgip7cwpv32fyf
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    cox_unadj_mrna_vax12_type_ignore_covidadmitted
    Status:
    Failed
    Job identifier:
    m6rlrgwq4xrgbjzd
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    cox_unadj_mrna_vax12_type_ignore_covidadmitted_overall
    Status:
    Failed
    Job identifier:
    4xm5ofmkwor2tljy
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    cox_unadj_mrna_vax12_type_ignore_coviddeath
    Status:
    Failed
    Job identifier:
    4vxoiuc4436erqk5
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    cox_unadj_mrna_vax12_type_ignore_coviddeath_overall
    Status:
    Failed
    Job identifier:
    d5me2z5epa5yaktd
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    cox_unadj_mrna_vax12_type_ignore_cvddeath
    Status:
    Failed
    Job identifier:
    dsdzupyswlq4uzpa
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    cox_unadj_mrna_vax12_type_ignore_cvddeath_overall
    Status:
    Failed
    Job identifier:
    wdbotidsln5fsp45
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    cox_unadj_mrna_vax12_type_ignore_fracture
    Status:
    Failed
    Job identifier:
    shygfptyxv2nri4r
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    cox_unadj_mrna_vax12_type_ignore_fracture_overall
    Status:
    Failed
    Job identifier:
    f5nqqj5uzxx5z2ls
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    cox_unadj_mrna_vax12_type_ignore_noncoviddeath
    Status:
    Failed
    Job identifier:
    lr6xeylzq3kg6lpw
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    cox_unadj_mrna_vax12_type_ignore_noncoviddeath_overall
    Status:
    Failed
    Job identifier:
    nf4fetgbppyar7ta
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    cox_unadj_mrna_vax12_type_ignore_postest
    Status:
    Failed
    Job identifier:
    gd2trmyzh6oib7bj
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    cox_unadj_mrna_vax12_type_ignore_postest_overall
    Status:
    Failed
    Job identifier:
    p663acdrjyxmucys
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    summarise_covidtests_mrna
    Status:
    Succeeded
    Job identifier:
    vhv5vak6h7wgtae3
  • Action:
    cancer_deaths
    Status:
    Failed
    Job identifier:
    rezhfhaw6umb3ak2
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    combine_mrna
    Status:
    Failed
    Job identifier:
    k6mbjur6ym5z3yo2
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 51:43:44

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
vaccine-effectiveness-3dose
Requested by
Will Hulme
Branch
main
Force run dependencies
No
Git commit hash
c65edb0
Requested actions
  • investigate_nonpos_tte_mrna
  • table1_mrna
  • coverage_mrna
  • flowchart
  • extract_covidtests_mrna_treated
  • extract_covidtests_mrna_control
  • process_covidtests_mrna
  • summarise_covidtests_mrna
  • cinc_dose4_mrna
  • cox_adj_mrna_all_ignore_postest
  • cox_adj_mrna_all_ignore_covidadmitted
  • cox_adj_mrna_all_ignore_coviddeath
  • cox_adj_mrna_all_ignore_noncoviddeath
  • cox_adj_mrna_all_ignore_cvddeath
  • cox_adj_mrna_all_ignore_cancerdeath
  • cox_adj_mrna_all_ignore_fracture
  • cox_adj_mrna_all_split_postest
  • cox_adj_mrna_all_split_covidadmitted
  • km_mrna_all_split_coviddeath
  • cox_adj_mrna_all_split_coviddeath
  • cox_adj_mrna_all_split_noncoviddeath
  • cox_adj_mrna_all_split_cvddeath
  • cox_adj_mrna_all_split_cancerdeath
  • cox_adj_mrna_all_split_fracture
  • cox_adj_mrna_all_restrict_postest
  • cox_adj_mrna_all_restrict_covidadmitted
  • cox_adj_mrna_all_restrict_noncoviddeath
  • cox_adj_mrna_prior_covid_infection_ignore_coviddeath_overall
  • cox_unadj_mrna_vax12_type_ignore_postest
  • cox_unadj_mrna_vax12_type_ignore_postest_overall
  • cox_adj_mrna_vax12_type_ignore_postest
  • cox_adj_mrna_vax12_type_ignore_postest_overall
  • cox_unadj_mrna_vax12_type_ignore_covidadmitted
  • cox_unadj_mrna_vax12_type_ignore_covidadmitted_overall
  • cox_adj_mrna_vax12_type_ignore_covidadmitted
  • cox_adj_mrna_vax12_type_ignore_covidadmitted_overall
  • cox_unadj_mrna_vax12_type_ignore_coviddeath
  • cox_unadj_mrna_vax12_type_ignore_coviddeath_overall
  • cox_adj_mrna_vax12_type_ignore_coviddeath
  • cox_adj_mrna_vax12_type_ignore_coviddeath_overall
  • cox_unadj_mrna_vax12_type_ignore_noncoviddeath
  • cox_unadj_mrna_vax12_type_ignore_noncoviddeath_overall
  • cox_adj_mrna_vax12_type_ignore_noncoviddeath
  • cox_adj_mrna_vax12_type_ignore_noncoviddeath_overall
  • cox_unadj_mrna_vax12_type_ignore_cvddeath
  • cox_unadj_mrna_vax12_type_ignore_cvddeath_overall
  • cox_adj_mrna_vax12_type_ignore_cvddeath
  • cox_adj_mrna_vax12_type_ignore_cvddeath_overall
  • cox_unadj_mrna_vax12_type_ignore_cancerdeath
  • cox_unadj_mrna_vax12_type_ignore_cancerdeath_overall
  • cox_adj_mrna_vax12_type_ignore_cancerdeath
  • cox_adj_mrna_vax12_type_ignore_cancerdeath_overall
  • cox_unadj_mrna_vax12_type_ignore_fracture
  • cox_unadj_mrna_vax12_type_ignore_fracture_overall
  • cox_adj_mrna_vax12_type_ignore_fracture
  • cox_adj_mrna_vax12_type_ignore_fracture_overall
  • cox_adj_mrna_agegroup_ignore_noncoviddeath
  • cox_adj_mrna_cev_cv_ignore_covidadmitted_overall
  • cox_adj_mrna_cev_cv_ignore_noncoviddeath
  • cox_adj_mrna_cev_cv_ignore_fracture_overall
  • combine_mrna
  • cancer_deaths

Code comparison

Compare the code used in this job request