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Job request: 24512

Organisation:
Bennett Institute
Workspace:
death-report
ID:
de6xojqi4s7tmrq2
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Andrea Schaffer requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: '4.0'

actions:
#Dataset for diff time
  dataset_death_date_diff:
    run: ehrql:v1 generate-dataset analysis/dataset_definition.py --output output/dataset_death_date_diff.csv.gz
    outputs:
      highly_sensitive:
        dataset: output/dataset_death_date_diff.csv.gz
  
  summary_stat:
    run: r:v2 analysis/summary_stats.R
      --output output/DoD/summary_stats_DoD.csv 
    needs: [dataset_death_date_diff]
    outputs:
      moderately_sensitive:
        continuous: output/DoD/summary_stats_DoD.csv
        categorical: output/DoD/table_freq_DoD.csv




# Measures
  measures_overall:
    run: ehrql:v1 generate-measures analysis/measure_def.py 
      --output output/measures/measures_overall.csv
    outputs:
      moderately_sensitive:
        measure_csv: output/measures/measures_overall.csv

  measures_by_practice:
    run: ehrql:v1 generate-measures analysis/measure_practice.py 
      --output output/measures/measures_by_practice.csv
    outputs:
      highly_sensitive:
        measure_csv: output/measures/measures_by_practice.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 17:07:56

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Succeeded
Backend
TPP
Workspace
death-report
Requested by
Andrea Schaffer
Branch
main
Force run dependencies
No
Git commit hash
a2f9f60
Requested actions
  • summary_stat
  • measures_overall
  • measures_by_practice

Code comparison

Compare the code used in this job request