Skip to content

Job request: 26743

Organisation:
Bennett Institute
Workspace:
death-report_followup
ID:
7udow5wtidyrcgar
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Irene Kyomuhangi requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    extract_data
    Status:
    Succeeded
    Job identifier:
    xnejwemcwlbaawfj
  • Action:
    apply_inclusion_exclusion
    Status:
    Succeeded
    Job identifier:
    ezt5fhgzixcsuntu
  • Action:
    extract_underlying_cause_summary
    Status:
    Succeeded
    Job identifier:
    vrstnrghkaev6f3t

Pipeline

Show project.yaml 
version: '5.0'

actions:

  extract_data:
    run: ehrql:v1 generate-dataset analysis/01_dataset_definition.py
      --dummy-tables dummy_tables
      --output output/highly_sensitive/dataset_death_ons_tpp.csv.gz
    outputs:
      highly_sensitive:
        dataset: output/highly_sensitive/dataset_death_ons_tpp.csv.gz

  apply_inclusion_exclusion:
    needs: [extract_data]
    run: r:v2 analysis/02_inclusion_exclusion_criteria.R
    outputs:
      highly_sensitive:
        cohort: output/02_cohort.csv
      moderately_sensitive:
        cohort_flow: output/02_cohort_flow.csv

  extract_underlying_cause_summary:
    needs: [apply_inclusion_exclusion]
    run: r:v2 analysis/03_extract_underlying_cause_summary.R
    outputs:
      moderately_sensitive:
        underlying_cause_summary: output/03_underlying_cause_summary.csv

Job statistics

Status Count Percentage
Pending 0 0%
Running 0 0%
Succeeded 3 100%
Failed 0 0%

3 / 3 (100%) complete

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:06:10

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Succeeded
Backend
TPP
Workspace
death-report_followup
Requested by
Irene Kyomuhangi
Branch
main
Force run dependencies
Yes
Git commit hash
8d10eb8
Requested actions
  • extract_data
  • apply_inclusion_exclusion
  • extract_underlying_cause_summary

Code comparison

Compare the code used in this job request

  • No previous job request available for comparison