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Job request: 26611

Organisation:
Bennett Institute
Workspace:
death-report_underlying_cod
ID:
yagwomgtcizenwpe
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Irene Kyomuhangi requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    extract_data
    Status:
    Pending
    Job identifier:
    fom73jyfphy5f3bl
    Status message:
    waiting_db_maintenance: Waiting for database to finish maintenance
  • Action:
    apply_inclusion_exclusion
    Status:
    Pending
    Job identifier:
    ssmvbvu5nvb2pt4m
    Status message:
    waiting_on_dependencies: Waiting on dependencies

Pipeline

Show project.yaml 
version: '5.0'

actions:

  extract_data:
    run: ehrql:v1 generate-dataset analysis/01_dataset_definition.py 
      --output output/highly_sensitive/dataset_death_ons_tpp.csv.gz
    outputs:
      highly_sensitive:
        dataset: output/highly_sensitive/dataset_death_ons_tpp.csv.gz

  apply_inclusion_exclusion:
    needs: [extract_data]
    run: r:v2 analysis/02_inclusion_exclusion_criteria.R
    outputs:
      highly_sensitive:
        cohort: output/02_cohort.csv
      moderately_sensitive:
        cohort_flow: output/02_cohort_flow.csv
        underlying_cause_summary: output/02_underlying_cause_summary.csv

Job statistics

Status Count Percentage
Pending 2 100%
Running 0 0%
Succeeded 0 0%
Failed 0 0%

0 / 2 (0%) complete

Timeline

  • Created:

  • Runtime:

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Pending
Backend
TPP
Workspace
death-report_underlying_cod
Requested by
Irene Kyomuhangi
Branch
extracting-underlying-cause-of-death-data
Force run dependencies
No
Git commit hash
a495d44
Requested actions
  • run_all

Code comparison

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