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Job request: 23212

Organisation:
Bennett Institute
Workspace:
prophy_effects_sotro_molnup
ID:
rqvevtxmbnhys3cw
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Qing Wen requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 5000

actions:

  gen_dataset_table:
    run: ehrql:v1 generate-dataset analysis/dataset_definition.py --output output/data/dataset_table.csv.gz
    outputs:
      highly_sensitive:
        cohort: output/data/dataset_table.csv.gz

  prep_descrip_r:
    run: r:latest analysis/data_prep_descrip.R
    needs: [gen_dataset_table]
    outputs:
      moderately_sensitive:
        data2: output/tables/table1_redacted_8b.csv
      highly_sensitive:
        data1: output/tables/data4analyse.csv
        rds: output/data/data4analyse.rds

  prep_descrip_stata:
   run: stata-mp:latest analysis/data_prep_descrip.do
   needs: [gen_dataset_table]
   outputs:
      moderately_sensitive:
        log: logs/data_preparation.log
      highly_sensitive:
        data: output/main.dta

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:06:32

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Succeeded
Backend
TPP
Workspace
prophy_effects_sotro_molnup
Requested by
Qing Wen
Branch
main
Force run dependencies
No
Git commit hash
0c163fd
Requested actions
  • gen_dataset_table

Code comparison

Compare the code used in this Job Request