Job request: 2322
This page shows the technical details of what happened when authorised researcher Helen Curtis requested one or more actions to be run against real patient data in the project, within a secure environment.
By cross-referencing the indicated Requested Actions with the
Pipeline section below, you can infer what
various outputs were written to. Outputs marked as
can never be viewed directly by a researcher; they can only
request that code runs against them. Outputs marked as
can be viewed by an approved researcher by logging into a highly
secure environment. Only outputs marked as
can be requested for release to the public, via a controlled
output review service.
version: '3.0' expectations: population_size: 10000 actions: generate_study_population: run: cohortextractor:latest generate_cohort --study-definition study_definition outputs: highly_sensitive: cohort: output/input.csv cohort_checks: run: python:latest python analysis/cohort_checks.py needs: [generate_study_population] outputs: moderately_sensitive: cohort: output/cohort_checks.csv transform: run: python:latest python analysis/transform.py output/input.csv needs: [generate_study_population] outputs: highly_sensitive: cohort: output/cohort*.pickle count_prevalences: run: python:latest python analysis/count_prevalences.py needs: [transform] outputs: moderately_sensitive: table: output/*/tables/prevalences.csv compute_uptake_for_paper: run: python:latest python analysis/compute_uptake_for_paper.py needs: [transform] outputs: moderately_sensitive: cohort: output/*/cumulative_coverage/*/*/*.csv generate_additional_outputs: run: python:latest python analysis/run_additional_charts.py needs: [transform] outputs: moderately_sensitive: additional_charts: output/*/additional_figures/*.png prac_table: output/*/additional_figures/practice_decline_summary.csv generate_outputs: run: python:latest python analysis/run_charts_and_tables.py needs: [transform, compute_uptake_for_paper] outputs: moderately_sensitive: charts: output/*/charts/*.png #reports: output/*/reports/*.html tables: output/*/tables/*.csv
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