Job request: 8424

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This page shows the technical details of what happened when authorised researcher Will Hulme requested one or more actions to be run against real patient data in the COVID-19 Vaccine Effectiveness project, within a secure environment.

By cross-referencing the indicated Requested Actions with the Pipeline section below, you can infer what security level various outputs were written to. Outputs marked as highly_sensitive can never be viewed directly by a researcher; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

ID Status Action
2p25gtu5wegcahtx succeeded model_seqtrialcox_moderna_covidadmitted_cev-FALSE
4spdz4uq4365nlwg succeeded model_seqtrialcox_moderna_covidadmitted_cev-TRUE
zc6u64cryj7fbcjf succeeded model_seqtrialcox_moderna_covidadmitted_prior_covid_infection-FALSE
btcyztvnxjwuvrjc succeeded model_seqtrialcox_moderna_covidadmitted_prior_covid_infection-TRUE
4wbll4337bvxxd5q succeeded model_seqtrialcox_moderna_covidadmittedproxy1_cev-FALSE
lwpjzvwgz276xsax succeeded model_seqtrialcox_moderna_covidadmittedproxy1_cev-TRUE
hhy6w33te422mg53 succeeded model_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-FALSE
lr7mao7je7aafdki succeeded model_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-TRUE
nkughvfkbefgur2a succeeded model_seqtrialcox_moderna_coviddeath_cev-FALSE
3aekuhnmrcinyb4i succeeded model_seqtrialcox_moderna_coviddeath_cev-TRUE
5jrvwlwj4x6sjddt succeeded model_seqtrialcox_moderna_coviddeath_prior_covid_infection-FALSE
f4h4yp5shhsmmnd6 succeeded model_seqtrialcox_moderna_coviddeath_prior_covid_infection-TRUE
6d7jcrd3yetvcgh7 succeeded model_seqtrialcox_moderna_covidemergency_cev-FALSE
ssc4a4qdx22vnldn succeeded model_seqtrialcox_moderna_covidemergency_cev-TRUE
jeish4u3czf75kws succeeded model_seqtrialcox_moderna_covidemergency_prior_covid_infection-FALSE
zwextbotxh7gqljw succeeded model_seqtrialcox_moderna_covidemergency_prior_covid_infection-TRUE
jwetwnwnyyg4vgza succeeded model_seqtrialcox_moderna_noncovidadmitted_cev-FALSE
q4h4vsymfdf7a6i6 succeeded model_seqtrialcox_moderna_noncovidadmitted_cev-TRUE
mhix3napq2lw24bp succeeded model_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-FALSE
6aog7qysppsgh5pr succeeded model_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-TRUE
jtakqwjlkmj42s22 succeeded model_seqtrialcox_moderna_noncoviddeath_cev-FALSE
ys7ns5qvkw2jkm37 succeeded model_seqtrialcox_moderna_noncoviddeath_cev-TRUE
aun2mjyxiup7k4lv succeeded model_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-FALSE
4m3r3kdim33drby3 succeeded model_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-TRUE
tt4gonh3wq4fpeq7 succeeded model_seqtrialcox_moderna_postest_cev-FALSE
gwaglz5gkbqbmopj succeeded model_seqtrialcox_moderna_postest_cev-TRUE
74iu67bioj4m3ixk succeeded model_seqtrialcox_moderna_postest_prior_covid_infection-FALSE
j2djciakj3oikv4p succeeded model_seqtrialcox_moderna_postest_prior_covid_infection-TRUE
zlv74pxteun67kx4 succeeded report_seqtrialcox_moderna_covidadmitted_cev-FALSE
h7igobpf5zz7a7u6 succeeded report_seqtrialcox_moderna_covidadmitted_cev-TRUE
3xhnxjskqaomstw7 succeeded report_seqtrialcox_moderna_covidadmitted_prior_covid_infection-FALSE
x2mrgzryoxyr6tf6 succeeded report_seqtrialcox_moderna_covidadmitted_prior_covid_infection-TRUE
gx7ieyxvjerhzdkg succeeded report_seqtrialcox_moderna_covidadmittedproxy1_cev-FALSE
3xsxgwutn2jes4cz succeeded report_seqtrialcox_moderna_covidadmittedproxy1_cev-TRUE
l4nzptfwhjw62ehd succeeded report_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-FALSE
kzh566hyg47j2qxs succeeded report_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-TRUE
6m2kvodzegzfstqr succeeded report_seqtrialcox_moderna_coviddeath_cev-FALSE
ape44bwz3tt32v4k succeeded report_seqtrialcox_moderna_coviddeath_cev-TRUE
fjwcnup7itbnx455 succeeded report_seqtrialcox_moderna_coviddeath_prior_covid_infection-FALSE
5i332ey7dypsl7pu succeeded report_seqtrialcox_moderna_coviddeath_prior_covid_infection-TRUE
jw4nnjgodhe7fpep succeeded report_seqtrialcox_moderna_covidemergency_cev-FALSE
egxf55m23awv2pnv succeeded report_seqtrialcox_moderna_covidemergency_cev-TRUE
yuszt4y5oisz4ah4 succeeded report_seqtrialcox_moderna_covidemergency_prior_covid_infection-FALSE
ddfpajsndbrpsck4 succeeded report_seqtrialcox_moderna_covidemergency_prior_covid_infection-TRUE
hkzoafvope7gk4p4 succeeded report_seqtrialcox_moderna_noncovidadmitted_cev-FALSE
22s6hgdkfk6tbode succeeded report_seqtrialcox_moderna_noncovidadmitted_cev-TRUE
fblcs3iwuiw5ffix succeeded report_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-FALSE
vua2uerblnibgq7l succeeded report_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-TRUE
byg4l5m4dn2jquhn succeeded report_seqtrialcox_moderna_noncoviddeath_cev-FALSE
onudpndony2pnyry succeeded report_seqtrialcox_moderna_noncoviddeath_cev-TRUE
wt5fa632knekd4r4 succeeded report_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-FALSE
e2vgz4xqpsrwnd5l succeeded report_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-TRUE
rrcirrkmenbb3hhb succeeded report_seqtrialcox_moderna_postest_cev-FALSE
y6chf455utnqyzbn succeeded report_seqtrialcox_moderna_postest_cev-TRUE
qa5q4myhrljokit2 succeeded report_seqtrialcox_moderna_postest_prior_covid_infection-FALSE
2v3ywrsof2y47xw4 succeeded report_seqtrialcox_moderna_postest_prior_covid_infection-TRUE
cmmljeldjkju7yez succeeded model_seqtrialcox_moderna_covidcc_cev-FALSE
tblmccfnfv6nsmpd succeeded report_seqtrialcox_moderna_covidcc_cev-FALSE
5xdskql2fv3j7txe succeeded model_seqtrialcox_moderna_covidcc_cev-TRUE
hnrzzmtjbct35opk succeeded report_seqtrialcox_moderna_covidcc_cev-TRUE
yle6pfgpo5ytub47 succeeded model_seqtrialcox_moderna_covidcc_prior_covid_infection-FALSE
hkw6f7ma7do35me2 succeeded report_seqtrialcox_moderna_covidcc_prior_covid_infection-FALSE
aiodgfez2lrdcn2x succeeded model_seqtrialcox_moderna_covidcc_prior_covid_infection-TRUE
e54cpv4mb4eaytze succeeded report_seqtrialcox_moderna_covidcc_prior_covid_infection-TRUE

Pipeline

Show Hide project.yaml
version: '3.0'

expectations:

  population_size: 100000

actions:

  ## # # # # # # # # # # # # # # # # # # # 
  ## DO NOT EDIT project.yaml DIRECTLY 
  ## This file is created by create-project.R 
  ## Edit and run create-project.R to update the project.yaml 
  ## # # # # # # # # # # # # # # # # # # # 
  ## # # # # # # # # # # # # # # # # # # # 
  ## Pre-server scripts 
  ## # # # # # # # # # # # # # # # # # # # 
  ## # # # # # # # # # # # # # # # # # # # 
  ## Extract and tidy 
  ## # # # # # # # # # # # # # # # # # # # 

  extract:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
      --output-format feather
    needs: []
    outputs:
      highly_sensitive:
        cohort: output/input.feather

  extract_report:
    run: cohort-report:v3.0.0 output/input.feather
    needs:
    - extract
    outputs:
      moderately_sensitive:
        html: output/data/reports/extract/*.html
        png: output/data/reports/extract/*.png
    config:
      output_path: output/data/reports/extract/

  data_process:
    run: r:latest analysis/data_process.R
    needs:
    - extract
    outputs:
      highly_sensitive:
        rds: output/data/data_processed.rds
        vaxlong: output/data/data_vaxlong.rds

  skim_process:
    run: r:latest analysis/data_skim.R output/data/data_processed.rds output/data_properties
    needs:
    - data_process
    outputs:
      moderately_sensitive:
        cohort: output/data_properties/data_processed*.txt

  data_process_long:
    run: r:latest analysis/data_process_long.R
    needs:
    - data_process
    outputs:
      highly_sensitive:
        processed: output/data/data_long*.rds

  data_selection:
    run: r:latest analysis/data_selection.R
    needs:
    - data_process
    outputs:
      highly_sensitive:
        data: output/data/data_cohort.rds
        feather: output/data/data_cohort.feather
      moderately_sensitive:
        flow: output/data/flowchart.csv

  skim_selection:
    run: r:latest analysis/data_skim.R output/data/data_cohort.rds output/data_properties
    needs:
    - data_selection
    outputs:
      moderately_sensitive:
        cohort: output/data_properties/data_cohort*.txt

  cohort_report:
    run: cohort-report:v3.0.0 output/data/data_cohort.feather
    needs:
    - data_selection
    outputs:
      moderately_sensitive:
        html: output/data/reports/cohort/*.html
        png: output/data/reports/cohort/*.png
    config:
      output_path: output/data/reports/cohort/

  ## # # # # # # # # # # # # # # # # # # # 
  ## Descriptive stats 
  ## # # # # # # # # # # # # # # # # # # # 

  descriptive_table1:
    run: r:latest analysis/table1.R
    needs:
    - data_selection
    outputs:
      moderately_sensitive:
        html: output/descriptive/table1/*.html
        csv: output/descriptive/table1/*.csv

  descriptive_vaxdate:
    run: r:latest analysis/vax_date.R
    needs:
    - data_selection
    outputs:
      moderately_sensitive:
        png: output/descriptive/vaxdate/*.png
        pdf: output/descriptive/vaxdate/*.pdf
        svg: output/descriptive/vaxdate/*.svg

  ## # # # # # # # # # # # # # # # # # # # 
  ## Matching 
  ## # # # # # # # # # # # # # # # # # # # 

  match_seqtrialcox_pfizer:
    run: r:latest analysis/match_seqtrialcox.R pfizer
    needs:
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/match/pfizer/match_*.rds
      moderately_sensitive:
        txt: output/match/pfizer/match_*.txt

  merge_seqtrialcox_pfizer:
    run: r:latest analysis/merge_seqtrialcox.R pfizer
    needs:
    - data_process
    - data_process_long
    - data_selection
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        txt: output/match/pfizer/merge_*.txt
        csv: output/match/pfizer/merge_*.csv
        png: output/match/pfizer/merge_*.png
        pdf: output/match/pfizer/merge_*.pdf
        html: output/match/pfizer/merge_*.html

  match_seqtrialcox_moderna:
    run: r:latest analysis/match_seqtrialcox.R moderna
    needs:
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/match/moderna/match_*.rds
      moderately_sensitive:
        txt: output/match/moderna/match_*.txt

  merge_seqtrialcox_moderna:
    run: r:latest analysis/merge_seqtrialcox.R moderna
    needs:
    - data_process
    - data_process_long
    - data_selection
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        txt: output/match/moderna/merge_*.txt
        csv: output/match/moderna/merge_*.csv
        png: output/match/moderna/merge_*.png
        pdf: output/match/moderna/merge_*.pdf
        html: output/match/moderna/merge_*.html

  combine_match:
    run: r:latest analysis/combine_match.R
    needs:
    - match_seqtrialcox_pfizer
    - match_seqtrialcox_moderna
    - merge_seqtrialcox_pfizer
    - merge_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/match/combined/*.csv

  ## # # # # # # # # # # # # # # # # # # # 
  ## Pfizer models 
  ## # # # # # # # # # # # # # # # # # # # 
  ## ### Overall models (''none'') 

  model_seqtrialcox_pfizer_postest_none:
    run: r:latest analysis/model_seqtrialcox.R pfizer postest none
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/postest/none/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/postest/none/model_*.txt
        csv: output/models/seqtrialcox/pfizer/postest/none/model_*.csv

  report_seqtrialcox_pfizer_postest_none:
    run: r:latest analysis/report_seqtrialcox.R pfizer postest none
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_postest_none
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/postest/none/report_*.csv
        svg: output/models/seqtrialcox/pfizer/postest/none/report_*.svg
        png: output/models/seqtrialcox/pfizer/postest/none/report_*.png

  model_seqtrialcox_pfizer_covidemergency_none:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidemergency none
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidemergency/none/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidemergency/none/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidemergency/none/model_*.csv

  report_seqtrialcox_pfizer_covidemergency_none:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidemergency none
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidemergency_none
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidemergency/none/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidemergency/none/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidemergency/none/report_*.png

  model_seqtrialcox_pfizer_covidadmittedproxy1_none:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidadmittedproxy1 none
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidadmittedproxy1/none/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidadmittedproxy1/none/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/none/model_*.csv

  report_seqtrialcox_pfizer_covidadmittedproxy1_none:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidadmittedproxy1 none
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidadmittedproxy1_none
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/none/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidadmittedproxy1/none/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidadmittedproxy1/none/report_*.png

  model_seqtrialcox_pfizer_covidadmitted_none:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidadmitted none
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidadmitted/none/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidadmitted/none/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidadmitted/none/model_*.csv

  report_seqtrialcox_pfizer_covidadmitted_none:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidadmitted none
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidadmitted_none
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidadmitted/none/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidadmitted/none/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidadmitted/none/report_*.png

  model_seqtrialcox_pfizer_noncovidadmitted_none:
    run: r:latest analysis/model_seqtrialcox.R pfizer noncovidadmitted none
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/noncovidadmitted/none/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/noncovidadmitted/none/model_*.txt
        csv: output/models/seqtrialcox/pfizer/noncovidadmitted/none/model_*.csv

  report_seqtrialcox_pfizer_noncovidadmitted_none:
    run: r:latest analysis/report_seqtrialcox.R pfizer noncovidadmitted none
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_noncovidadmitted_none
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/noncovidadmitted/none/report_*.csv
        svg: output/models/seqtrialcox/pfizer/noncovidadmitted/none/report_*.svg
        png: output/models/seqtrialcox/pfizer/noncovidadmitted/none/report_*.png

  model_seqtrialcox_pfizer_covidcc_none:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidcc none
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidcc/none/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidcc/none/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidcc/none/model_*.csv

  report_seqtrialcox_pfizer_covidcc_none:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidcc none
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidcc_none
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidcc/none/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidcc/none/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidcc/none/report_*.png

  model_seqtrialcox_pfizer_coviddeath_none:
    run: r:latest analysis/model_seqtrialcox.R pfizer coviddeath none
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/coviddeath/none/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/coviddeath/none/model_*.txt
        csv: output/models/seqtrialcox/pfizer/coviddeath/none/model_*.csv

  report_seqtrialcox_pfizer_coviddeath_none:
    run: r:latest analysis/report_seqtrialcox.R pfizer coviddeath none
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_coviddeath_none
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/coviddeath/none/report_*.csv
        svg: output/models/seqtrialcox/pfizer/coviddeath/none/report_*.svg
        png: output/models/seqtrialcox/pfizer/coviddeath/none/report_*.png

  model_seqtrialcox_pfizer_noncoviddeath_none:
    run: r:latest analysis/model_seqtrialcox.R pfizer noncoviddeath none
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/noncoviddeath/none/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/noncoviddeath/none/model_*.txt
        csv: output/models/seqtrialcox/pfizer/noncoviddeath/none/model_*.csv

  report_seqtrialcox_pfizer_noncoviddeath_none:
    run: r:latest analysis/report_seqtrialcox.R pfizer noncoviddeath none
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_noncoviddeath_none
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/noncoviddeath/none/report_*.csv
        svg: output/models/seqtrialcox/pfizer/noncoviddeath/none/report_*.svg
        png: output/models/seqtrialcox/pfizer/noncoviddeath/none/report_*.png

  ## ### Models by primary course (''vax12_type'') 

  model_seqtrialcox_pfizer_postest_vax12_type-az-az:
    run: r:latest analysis/model_seqtrialcox.R pfizer postest vax12_type-az-az
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/postest/vax12_type-az-az/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/postest/vax12_type-az-az/model_*.txt
        csv: output/models/seqtrialcox/pfizer/postest/vax12_type-az-az/model_*.csv

  report_seqtrialcox_pfizer_postest_vax12_type-az-az:
    run: r:latest analysis/report_seqtrialcox.R pfizer postest vax12_type-az-az
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_postest_vax12_type-az-az
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/postest/vax12_type-az-az/report_*.csv
        svg: output/models/seqtrialcox/pfizer/postest/vax12_type-az-az/report_*.svg
        png: output/models/seqtrialcox/pfizer/postest/vax12_type-az-az/report_*.png

  model_seqtrialcox_pfizer_postest_vax12_type-pfizer-pfizer:
    run: r:latest analysis/model_seqtrialcox.R pfizer postest vax12_type-pfizer-pfizer
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/postest/vax12_type-pfizer-pfizer/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/postest/vax12_type-pfizer-pfizer/model_*.txt
        csv: output/models/seqtrialcox/pfizer/postest/vax12_type-pfizer-pfizer/model_*.csv

  report_seqtrialcox_pfizer_postest_vax12_type-pfizer-pfizer:
    run: r:latest analysis/report_seqtrialcox.R pfizer postest vax12_type-pfizer-pfizer
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_postest_vax12_type-pfizer-pfizer
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/postest/vax12_type-pfizer-pfizer/report_*.csv
        svg: output/models/seqtrialcox/pfizer/postest/vax12_type-pfizer-pfizer/report_*.svg
        png: output/models/seqtrialcox/pfizer/postest/vax12_type-pfizer-pfizer/report_*.png

  model_seqtrialcox_pfizer_covidemergency_vax12_type-az-az:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidemergency vax12_type-az-az
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidemergency/vax12_type-az-az/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidemergency/vax12_type-az-az/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidemergency/vax12_type-az-az/model_*.csv

  report_seqtrialcox_pfizer_covidemergency_vax12_type-az-az:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidemergency vax12_type-az-az
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidemergency_vax12_type-az-az
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidemergency/vax12_type-az-az/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidemergency/vax12_type-az-az/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidemergency/vax12_type-az-az/report_*.png

  model_seqtrialcox_pfizer_covidemergency_vax12_type-pfizer-pfizer:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidemergency vax12_type-pfizer-pfizer
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidemergency/vax12_type-pfizer-pfizer/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidemergency/vax12_type-pfizer-pfizer/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidemergency/vax12_type-pfizer-pfizer/model_*.csv

  report_seqtrialcox_pfizer_covidemergency_vax12_type-pfizer-pfizer:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidemergency vax12_type-pfizer-pfizer
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidemergency_vax12_type-pfizer-pfizer
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidemergency/vax12_type-pfizer-pfizer/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidemergency/vax12_type-pfizer-pfizer/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidemergency/vax12_type-pfizer-pfizer/report_*.png

  model_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-az-az:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidadmittedproxy1 vax12_type-az-az
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidadmittedproxy1/vax12_type-az-az/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidadmittedproxy1/vax12_type-az-az/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/vax12_type-az-az/model_*.csv

  report_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-az-az:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidadmittedproxy1 vax12_type-az-az
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-az-az
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/vax12_type-az-az/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidadmittedproxy1/vax12_type-az-az/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidadmittedproxy1/vax12_type-az-az/report_*.png

  model_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-pfizer-pfizer:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidadmittedproxy1 vax12_type-pfizer-pfizer
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidadmittedproxy1/vax12_type-pfizer-pfizer/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidadmittedproxy1/vax12_type-pfizer-pfizer/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/vax12_type-pfizer-pfizer/model_*.csv

  report_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-pfizer-pfizer:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidadmittedproxy1 vax12_type-pfizer-pfizer
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-pfizer-pfizer
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/vax12_type-pfizer-pfizer/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidadmittedproxy1/vax12_type-pfizer-pfizer/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidadmittedproxy1/vax12_type-pfizer-pfizer/report_*.png

  model_seqtrialcox_pfizer_covidadmitted_vax12_type-az-az:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidadmitted vax12_type-az-az
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidadmitted/vax12_type-az-az/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidadmitted/vax12_type-az-az/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidadmitted/vax12_type-az-az/model_*.csv

  report_seqtrialcox_pfizer_covidadmitted_vax12_type-az-az:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidadmitted vax12_type-az-az
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidadmitted_vax12_type-az-az
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidadmitted/vax12_type-az-az/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidadmitted/vax12_type-az-az/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidadmitted/vax12_type-az-az/report_*.png

  model_seqtrialcox_pfizer_covidadmitted_vax12_type-pfizer-pfizer:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidadmitted vax12_type-pfizer-pfizer
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidadmitted/vax12_type-pfizer-pfizer/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidadmitted/vax12_type-pfizer-pfizer/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidadmitted/vax12_type-pfizer-pfizer/model_*.csv

  report_seqtrialcox_pfizer_covidadmitted_vax12_type-pfizer-pfizer:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidadmitted vax12_type-pfizer-pfizer
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidadmitted_vax12_type-pfizer-pfizer
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidadmitted/vax12_type-pfizer-pfizer/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidadmitted/vax12_type-pfizer-pfizer/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidadmitted/vax12_type-pfizer-pfizer/report_*.png

  model_seqtrialcox_pfizer_noncovidadmitted_vax12_type-az-az:
    run: r:latest analysis/model_seqtrialcox.R pfizer noncovidadmitted vax12_type-az-az
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/noncovidadmitted/vax12_type-az-az/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/noncovidadmitted/vax12_type-az-az/model_*.txt
        csv: output/models/seqtrialcox/pfizer/noncovidadmitted/vax12_type-az-az/model_*.csv

  report_seqtrialcox_pfizer_noncovidadmitted_vax12_type-az-az:
    run: r:latest analysis/report_seqtrialcox.R pfizer noncovidadmitted vax12_type-az-az
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_noncovidadmitted_vax12_type-az-az
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/noncovidadmitted/vax12_type-az-az/report_*.csv
        svg: output/models/seqtrialcox/pfizer/noncovidadmitted/vax12_type-az-az/report_*.svg
        png: output/models/seqtrialcox/pfizer/noncovidadmitted/vax12_type-az-az/report_*.png

  model_seqtrialcox_pfizer_noncovidadmitted_vax12_type-pfizer-pfizer:
    run: r:latest analysis/model_seqtrialcox.R pfizer noncovidadmitted vax12_type-pfizer-pfizer
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/noncovidadmitted/vax12_type-pfizer-pfizer/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/noncovidadmitted/vax12_type-pfizer-pfizer/model_*.txt
        csv: output/models/seqtrialcox/pfizer/noncovidadmitted/vax12_type-pfizer-pfizer/model_*.csv

  report_seqtrialcox_pfizer_noncovidadmitted_vax12_type-pfizer-pfizer:
    run: r:latest analysis/report_seqtrialcox.R pfizer noncovidadmitted vax12_type-pfizer-pfizer
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_noncovidadmitted_vax12_type-pfizer-pfizer
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/noncovidadmitted/vax12_type-pfizer-pfizer/report_*.csv
        svg: output/models/seqtrialcox/pfizer/noncovidadmitted/vax12_type-pfizer-pfizer/report_*.svg
        png: output/models/seqtrialcox/pfizer/noncovidadmitted/vax12_type-pfizer-pfizer/report_*.png

  model_seqtrialcox_pfizer_covidcc_vax12_type-az-az:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidcc vax12_type-az-az
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidcc/vax12_type-az-az/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidcc/vax12_type-az-az/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidcc/vax12_type-az-az/model_*.csv

  report_seqtrialcox_pfizer_covidcc_vax12_type-az-az:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidcc vax12_type-az-az
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidcc_vax12_type-az-az
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidcc/vax12_type-az-az/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidcc/vax12_type-az-az/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidcc/vax12_type-az-az/report_*.png

  model_seqtrialcox_pfizer_covidcc_vax12_type-pfizer-pfizer:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidcc vax12_type-pfizer-pfizer
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidcc/vax12_type-pfizer-pfizer/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidcc/vax12_type-pfizer-pfizer/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidcc/vax12_type-pfizer-pfizer/model_*.csv

  report_seqtrialcox_pfizer_covidcc_vax12_type-pfizer-pfizer:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidcc vax12_type-pfizer-pfizer
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidcc_vax12_type-pfizer-pfizer
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidcc/vax12_type-pfizer-pfizer/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidcc/vax12_type-pfizer-pfizer/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidcc/vax12_type-pfizer-pfizer/report_*.png

  model_seqtrialcox_pfizer_coviddeath_vax12_type-az-az:
    run: r:latest analysis/model_seqtrialcox.R pfizer coviddeath vax12_type-az-az
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/coviddeath/vax12_type-az-az/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/coviddeath/vax12_type-az-az/model_*.txt
        csv: output/models/seqtrialcox/pfizer/coviddeath/vax12_type-az-az/model_*.csv

  report_seqtrialcox_pfizer_coviddeath_vax12_type-az-az:
    run: r:latest analysis/report_seqtrialcox.R pfizer coviddeath vax12_type-az-az
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_coviddeath_vax12_type-az-az
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/coviddeath/vax12_type-az-az/report_*.csv
        svg: output/models/seqtrialcox/pfizer/coviddeath/vax12_type-az-az/report_*.svg
        png: output/models/seqtrialcox/pfizer/coviddeath/vax12_type-az-az/report_*.png

  model_seqtrialcox_pfizer_coviddeath_vax12_type-pfizer-pfizer:
    run: r:latest analysis/model_seqtrialcox.R pfizer coviddeath vax12_type-pfizer-pfizer
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/coviddeath/vax12_type-pfizer-pfizer/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/coviddeath/vax12_type-pfizer-pfizer/model_*.txt
        csv: output/models/seqtrialcox/pfizer/coviddeath/vax12_type-pfizer-pfizer/model_*.csv

  report_seqtrialcox_pfizer_coviddeath_vax12_type-pfizer-pfizer:
    run: r:latest analysis/report_seqtrialcox.R pfizer coviddeath vax12_type-pfizer-pfizer
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_coviddeath_vax12_type-pfizer-pfizer
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/coviddeath/vax12_type-pfizer-pfizer/report_*.csv
        svg: output/models/seqtrialcox/pfizer/coviddeath/vax12_type-pfizer-pfizer/report_*.svg
        png: output/models/seqtrialcox/pfizer/coviddeath/vax12_type-pfizer-pfizer/report_*.png

  model_seqtrialcox_pfizer_noncoviddeath_vax12_type-az-az:
    run: r:latest analysis/model_seqtrialcox.R pfizer noncoviddeath vax12_type-az-az
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/noncoviddeath/vax12_type-az-az/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/noncoviddeath/vax12_type-az-az/model_*.txt
        csv: output/models/seqtrialcox/pfizer/noncoviddeath/vax12_type-az-az/model_*.csv

  report_seqtrialcox_pfizer_noncoviddeath_vax12_type-az-az:
    run: r:latest analysis/report_seqtrialcox.R pfizer noncoviddeath vax12_type-az-az
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_noncoviddeath_vax12_type-az-az
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/noncoviddeath/vax12_type-az-az/report_*.csv
        svg: output/models/seqtrialcox/pfizer/noncoviddeath/vax12_type-az-az/report_*.svg
        png: output/models/seqtrialcox/pfizer/noncoviddeath/vax12_type-az-az/report_*.png

  model_seqtrialcox_pfizer_noncoviddeath_vax12_type-pfizer-pfizer:
    run: r:latest analysis/model_seqtrialcox.R pfizer noncoviddeath vax12_type-pfizer-pfizer
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/noncoviddeath/vax12_type-pfizer-pfizer/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/noncoviddeath/vax12_type-pfizer-pfizer/model_*.txt
        csv: output/models/seqtrialcox/pfizer/noncoviddeath/vax12_type-pfizer-pfizer/model_*.csv

  report_seqtrialcox_pfizer_noncoviddeath_vax12_type-pfizer-pfizer:
    run: r:latest analysis/report_seqtrialcox.R pfizer noncoviddeath vax12_type-pfizer-pfizer
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_noncoviddeath_vax12_type-pfizer-pfizer
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/noncoviddeath/vax12_type-pfizer-pfizer/report_*.csv
        svg: output/models/seqtrialcox/pfizer/noncoviddeath/vax12_type-pfizer-pfizer/report_*.svg
        png: output/models/seqtrialcox/pfizer/noncoviddeath/vax12_type-pfizer-pfizer/report_*.png

  ## ### Models by clinical extremely vulnerable (''cev'') 

  model_seqtrialcox_pfizer_postest_cev-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer postest cev-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/postest/cev-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/postest/cev-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/postest/cev-FALSE/model_*.csv

  report_seqtrialcox_pfizer_postest_cev-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer postest cev-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_postest_cev-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/postest/cev-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/postest/cev-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/postest/cev-FALSE/report_*.png

  model_seqtrialcox_pfizer_postest_cev-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer postest cev-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/postest/cev-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/postest/cev-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/postest/cev-TRUE/model_*.csv

  report_seqtrialcox_pfizer_postest_cev-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer postest cev-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_postest_cev-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/postest/cev-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/postest/cev-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/postest/cev-TRUE/report_*.png

  model_seqtrialcox_pfizer_covidemergency_cev-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidemergency cev-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidemergency/cev-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidemergency/cev-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidemergency/cev-FALSE/model_*.csv

  report_seqtrialcox_pfizer_covidemergency_cev-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidemergency cev-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidemergency_cev-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidemergency/cev-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidemergency/cev-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidemergency/cev-FALSE/report_*.png

  model_seqtrialcox_pfizer_covidemergency_cev-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidemergency cev-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidemergency/cev-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidemergency/cev-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidemergency/cev-TRUE/model_*.csv

  report_seqtrialcox_pfizer_covidemergency_cev-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidemergency cev-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidemergency_cev-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidemergency/cev-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidemergency/cev-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidemergency/cev-TRUE/report_*.png

  model_seqtrialcox_pfizer_covidadmittedproxy1_cev-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidadmittedproxy1 cev-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidadmittedproxy1/cev-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidadmittedproxy1/cev-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/cev-FALSE/model_*.csv

  report_seqtrialcox_pfizer_covidadmittedproxy1_cev-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidadmittedproxy1 cev-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidadmittedproxy1_cev-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/cev-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidadmittedproxy1/cev-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidadmittedproxy1/cev-FALSE/report_*.png

  model_seqtrialcox_pfizer_covidadmittedproxy1_cev-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidadmittedproxy1 cev-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidadmittedproxy1/cev-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidadmittedproxy1/cev-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/cev-TRUE/model_*.csv

  report_seqtrialcox_pfizer_covidadmittedproxy1_cev-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidadmittedproxy1 cev-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidadmittedproxy1_cev-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/cev-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidadmittedproxy1/cev-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidadmittedproxy1/cev-TRUE/report_*.png

  model_seqtrialcox_pfizer_covidadmitted_cev-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidadmitted cev-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidadmitted/cev-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidadmitted/cev-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidadmitted/cev-FALSE/model_*.csv

  report_seqtrialcox_pfizer_covidadmitted_cev-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidadmitted cev-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidadmitted_cev-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidadmitted/cev-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidadmitted/cev-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidadmitted/cev-FALSE/report_*.png

  model_seqtrialcox_pfizer_covidadmitted_cev-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidadmitted cev-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidadmitted/cev-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidadmitted/cev-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidadmitted/cev-TRUE/model_*.csv

  report_seqtrialcox_pfizer_covidadmitted_cev-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidadmitted cev-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidadmitted_cev-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidadmitted/cev-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidadmitted/cev-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidadmitted/cev-TRUE/report_*.png

  model_seqtrialcox_pfizer_noncovidadmitted_cev-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer noncovidadmitted cev-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/noncovidadmitted/cev-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/noncovidadmitted/cev-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/noncovidadmitted/cev-FALSE/model_*.csv

  report_seqtrialcox_pfizer_noncovidadmitted_cev-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer noncovidadmitted cev-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_noncovidadmitted_cev-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/noncovidadmitted/cev-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/noncovidadmitted/cev-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/noncovidadmitted/cev-FALSE/report_*.png

  model_seqtrialcox_pfizer_noncovidadmitted_cev-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer noncovidadmitted cev-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/noncovidadmitted/cev-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/noncovidadmitted/cev-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/noncovidadmitted/cev-TRUE/model_*.csv

  report_seqtrialcox_pfizer_noncovidadmitted_cev-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer noncovidadmitted cev-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_noncovidadmitted_cev-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/noncovidadmitted/cev-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/noncovidadmitted/cev-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/noncovidadmitted/cev-TRUE/report_*.png

  model_seqtrialcox_pfizer_covidcc_cev-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidcc cev-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidcc/cev-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidcc/cev-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidcc/cev-FALSE/model_*.csv

  report_seqtrialcox_pfizer_covidcc_cev-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidcc cev-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidcc_cev-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidcc/cev-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidcc/cev-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidcc/cev-FALSE/report_*.png

  model_seqtrialcox_pfizer_covidcc_cev-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidcc cev-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidcc/cev-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidcc/cev-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidcc/cev-TRUE/model_*.csv

  report_seqtrialcox_pfizer_covidcc_cev-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidcc cev-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidcc_cev-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidcc/cev-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidcc/cev-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidcc/cev-TRUE/report_*.png

  model_seqtrialcox_pfizer_coviddeath_cev-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer coviddeath cev-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/coviddeath/cev-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/coviddeath/cev-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/coviddeath/cev-FALSE/model_*.csv

  report_seqtrialcox_pfizer_coviddeath_cev-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer coviddeath cev-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_coviddeath_cev-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/coviddeath/cev-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/coviddeath/cev-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/coviddeath/cev-FALSE/report_*.png

  model_seqtrialcox_pfizer_coviddeath_cev-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer coviddeath cev-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/coviddeath/cev-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/coviddeath/cev-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/coviddeath/cev-TRUE/model_*.csv

  report_seqtrialcox_pfizer_coviddeath_cev-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer coviddeath cev-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_coviddeath_cev-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/coviddeath/cev-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/coviddeath/cev-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/coviddeath/cev-TRUE/report_*.png

  model_seqtrialcox_pfizer_noncoviddeath_cev-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer noncoviddeath cev-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/noncoviddeath/cev-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/noncoviddeath/cev-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/noncoviddeath/cev-FALSE/model_*.csv

  report_seqtrialcox_pfizer_noncoviddeath_cev-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer noncoviddeath cev-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_noncoviddeath_cev-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/noncoviddeath/cev-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/noncoviddeath/cev-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/noncoviddeath/cev-FALSE/report_*.png

  model_seqtrialcox_pfizer_noncoviddeath_cev-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer noncoviddeath cev-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/noncoviddeath/cev-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/noncoviddeath/cev-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/noncoviddeath/cev-TRUE/model_*.csv

  report_seqtrialcox_pfizer_noncoviddeath_cev-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer noncoviddeath cev-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_noncoviddeath_cev-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/noncoviddeath/cev-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/noncoviddeath/cev-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/noncoviddeath/cev-TRUE/report_*.png

  ## ### Models by prior infection (''prior_covid_infection'') 

  model_seqtrialcox_pfizer_postest_prior_covid_infection-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer postest prior_covid_infection-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/postest/prior_covid_infection-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/postest/prior_covid_infection-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/postest/prior_covid_infection-FALSE/model_*.csv

  report_seqtrialcox_pfizer_postest_prior_covid_infection-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer postest prior_covid_infection-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_postest_prior_covid_infection-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/postest/prior_covid_infection-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/postest/prior_covid_infection-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/postest/prior_covid_infection-FALSE/report_*.png

  model_seqtrialcox_pfizer_postest_prior_covid_infection-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer postest prior_covid_infection-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/postest/prior_covid_infection-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/postest/prior_covid_infection-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/postest/prior_covid_infection-TRUE/model_*.csv

  report_seqtrialcox_pfizer_postest_prior_covid_infection-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer postest prior_covid_infection-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_postest_prior_covid_infection-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/postest/prior_covid_infection-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/postest/prior_covid_infection-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/postest/prior_covid_infection-TRUE/report_*.png

  model_seqtrialcox_pfizer_covidemergency_prior_covid_infection-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidemergency prior_covid_infection-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidemergency/prior_covid_infection-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidemergency/prior_covid_infection-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidemergency/prior_covid_infection-FALSE/model_*.csv

  report_seqtrialcox_pfizer_covidemergency_prior_covid_infection-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidemergency prior_covid_infection-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidemergency_prior_covid_infection-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidemergency/prior_covid_infection-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidemergency/prior_covid_infection-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidemergency/prior_covid_infection-FALSE/report_*.png

  model_seqtrialcox_pfizer_covidemergency_prior_covid_infection-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidemergency prior_covid_infection-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidemergency/prior_covid_infection-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidemergency/prior_covid_infection-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidemergency/prior_covid_infection-TRUE/model_*.csv

  report_seqtrialcox_pfizer_covidemergency_prior_covid_infection-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidemergency prior_covid_infection-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidemergency_prior_covid_infection-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidemergency/prior_covid_infection-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidemergency/prior_covid_infection-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidemergency/prior_covid_infection-TRUE/report_*.png

  model_seqtrialcox_pfizer_covidadmittedproxy1_prior_covid_infection-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidadmittedproxy1 prior_covid_infection-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidadmittedproxy1/prior_covid_infection-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidadmittedproxy1/prior_covid_infection-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/prior_covid_infection-FALSE/model_*.csv

  report_seqtrialcox_pfizer_covidadmittedproxy1_prior_covid_infection-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidadmittedproxy1 prior_covid_infection-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidadmittedproxy1_prior_covid_infection-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/prior_covid_infection-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidadmittedproxy1/prior_covid_infection-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidadmittedproxy1/prior_covid_infection-FALSE/report_*.png

  model_seqtrialcox_pfizer_covidadmittedproxy1_prior_covid_infection-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidadmittedproxy1 prior_covid_infection-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidadmittedproxy1/prior_covid_infection-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidadmittedproxy1/prior_covid_infection-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/prior_covid_infection-TRUE/model_*.csv

  report_seqtrialcox_pfizer_covidadmittedproxy1_prior_covid_infection-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidadmittedproxy1 prior_covid_infection-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidadmittedproxy1_prior_covid_infection-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/prior_covid_infection-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidadmittedproxy1/prior_covid_infection-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidadmittedproxy1/prior_covid_infection-TRUE/report_*.png

  model_seqtrialcox_pfizer_covidadmitted_prior_covid_infection-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidadmitted prior_covid_infection-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidadmitted/prior_covid_infection-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidadmitted/prior_covid_infection-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidadmitted/prior_covid_infection-FALSE/model_*.csv

  report_seqtrialcox_pfizer_covidadmitted_prior_covid_infection-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidadmitted prior_covid_infection-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidadmitted_prior_covid_infection-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidadmitted/prior_covid_infection-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidadmitted/prior_covid_infection-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidadmitted/prior_covid_infection-FALSE/report_*.png

  model_seqtrialcox_pfizer_covidadmitted_prior_covid_infection-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidadmitted prior_covid_infection-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidadmitted/prior_covid_infection-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidadmitted/prior_covid_infection-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidadmitted/prior_covid_infection-TRUE/model_*.csv

  report_seqtrialcox_pfizer_covidadmitted_prior_covid_infection-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidadmitted prior_covid_infection-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidadmitted_prior_covid_infection-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidadmitted/prior_covid_infection-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidadmitted/prior_covid_infection-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidadmitted/prior_covid_infection-TRUE/report_*.png

  model_seqtrialcox_pfizer_noncovidadmitted_prior_covid_infection-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer noncovidadmitted prior_covid_infection-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/noncovidadmitted/prior_covid_infection-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/noncovidadmitted/prior_covid_infection-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/noncovidadmitted/prior_covid_infection-FALSE/model_*.csv

  report_seqtrialcox_pfizer_noncovidadmitted_prior_covid_infection-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer noncovidadmitted prior_covid_infection-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_noncovidadmitted_prior_covid_infection-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/noncovidadmitted/prior_covid_infection-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/noncovidadmitted/prior_covid_infection-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/noncovidadmitted/prior_covid_infection-FALSE/report_*.png

  model_seqtrialcox_pfizer_noncovidadmitted_prior_covid_infection-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer noncovidadmitted prior_covid_infection-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/noncovidadmitted/prior_covid_infection-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/noncovidadmitted/prior_covid_infection-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/noncovidadmitted/prior_covid_infection-TRUE/model_*.csv

  report_seqtrialcox_pfizer_noncovidadmitted_prior_covid_infection-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer noncovidadmitted prior_covid_infection-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_noncovidadmitted_prior_covid_infection-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/noncovidadmitted/prior_covid_infection-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/noncovidadmitted/prior_covid_infection-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/noncovidadmitted/prior_covid_infection-TRUE/report_*.png

  model_seqtrialcox_pfizer_covidcc_prior_covid_infection-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidcc prior_covid_infection-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidcc/prior_covid_infection-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidcc/prior_covid_infection-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidcc/prior_covid_infection-FALSE/model_*.csv

  report_seqtrialcox_pfizer_covidcc_prior_covid_infection-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidcc prior_covid_infection-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidcc_prior_covid_infection-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidcc/prior_covid_infection-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidcc/prior_covid_infection-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidcc/prior_covid_infection-FALSE/report_*.png

  model_seqtrialcox_pfizer_covidcc_prior_covid_infection-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidcc prior_covid_infection-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidcc/prior_covid_infection-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidcc/prior_covid_infection-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidcc/prior_covid_infection-TRUE/model_*.csv

  report_seqtrialcox_pfizer_covidcc_prior_covid_infection-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidcc prior_covid_infection-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidcc_prior_covid_infection-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidcc/prior_covid_infection-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidcc/prior_covid_infection-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidcc/prior_covid_infection-TRUE/report_*.png

  model_seqtrialcox_pfizer_coviddeath_prior_covid_infection-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer coviddeath prior_covid_infection-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/coviddeath/prior_covid_infection-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/coviddeath/prior_covid_infection-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/coviddeath/prior_covid_infection-FALSE/model_*.csv

  report_seqtrialcox_pfizer_coviddeath_prior_covid_infection-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer coviddeath prior_covid_infection-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_coviddeath_prior_covid_infection-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/coviddeath/prior_covid_infection-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/coviddeath/prior_covid_infection-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/coviddeath/prior_covid_infection-FALSE/report_*.png

  model_seqtrialcox_pfizer_coviddeath_prior_covid_infection-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer coviddeath prior_covid_infection-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/coviddeath/prior_covid_infection-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/coviddeath/prior_covid_infection-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/coviddeath/prior_covid_infection-TRUE/model_*.csv

  report_seqtrialcox_pfizer_coviddeath_prior_covid_infection-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer coviddeath prior_covid_infection-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_coviddeath_prior_covid_infection-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/coviddeath/prior_covid_infection-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/coviddeath/prior_covid_infection-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/coviddeath/prior_covid_infection-TRUE/report_*.png

  model_seqtrialcox_pfizer_noncoviddeath_prior_covid_infection-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer noncoviddeath prior_covid_infection-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/noncoviddeath/prior_covid_infection-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/noncoviddeath/prior_covid_infection-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/noncoviddeath/prior_covid_infection-FALSE/model_*.csv

  report_seqtrialcox_pfizer_noncoviddeath_prior_covid_infection-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer noncoviddeath prior_covid_infection-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_noncoviddeath_prior_covid_infection-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/noncoviddeath/prior_covid_infection-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/noncoviddeath/prior_covid_infection-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/noncoviddeath/prior_covid_infection-FALSE/report_*.png

  model_seqtrialcox_pfizer_noncoviddeath_prior_covid_infection-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer noncoviddeath prior_covid_infection-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/noncoviddeath/prior_covid_infection-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/noncoviddeath/prior_covid_infection-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/noncoviddeath/prior_covid_infection-TRUE/model_*.csv

  report_seqtrialcox_pfizer_noncoviddeath_prior_covid_infection-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer noncoviddeath prior_covid_infection-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_noncoviddeath_prior_covid_infection-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/noncoviddeath/prior_covid_infection-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/noncoviddeath/prior_covid_infection-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/noncoviddeath/prior_covid_infection-TRUE/report_*.png

  ## ### Models by age (''age65plus'') 

  model_seqtrialcox_pfizer_postest_age65plus-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer postest age65plus-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/postest/age65plus-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/postest/age65plus-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/postest/age65plus-FALSE/model_*.csv

  report_seqtrialcox_pfizer_postest_age65plus-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer postest age65plus-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_postest_age65plus-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/postest/age65plus-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/postest/age65plus-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/postest/age65plus-FALSE/report_*.png

  model_seqtrialcox_pfizer_postest_age65plus-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer postest age65plus-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/postest/age65plus-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/postest/age65plus-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/postest/age65plus-TRUE/model_*.csv

  report_seqtrialcox_pfizer_postest_age65plus-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer postest age65plus-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_postest_age65plus-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/postest/age65plus-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/postest/age65plus-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/postest/age65plus-TRUE/report_*.png

  model_seqtrialcox_pfizer_covidemergency_age65plus-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidemergency age65plus-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidemergency/age65plus-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidemergency/age65plus-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidemergency/age65plus-FALSE/model_*.csv

  report_seqtrialcox_pfizer_covidemergency_age65plus-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidemergency age65plus-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidemergency_age65plus-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidemergency/age65plus-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidemergency/age65plus-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidemergency/age65plus-FALSE/report_*.png

  model_seqtrialcox_pfizer_covidemergency_age65plus-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidemergency age65plus-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidemergency/age65plus-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidemergency/age65plus-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidemergency/age65plus-TRUE/model_*.csv

  report_seqtrialcox_pfizer_covidemergency_age65plus-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidemergency age65plus-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidemergency_age65plus-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidemergency/age65plus-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidemergency/age65plus-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidemergency/age65plus-TRUE/report_*.png

  model_seqtrialcox_pfizer_covidadmittedproxy1_age65plus-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidadmittedproxy1 age65plus-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidadmittedproxy1/age65plus-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidadmittedproxy1/age65plus-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/age65plus-FALSE/model_*.csv

  report_seqtrialcox_pfizer_covidadmittedproxy1_age65plus-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidadmittedproxy1 age65plus-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidadmittedproxy1_age65plus-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/age65plus-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidadmittedproxy1/age65plus-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidadmittedproxy1/age65plus-FALSE/report_*.png

  model_seqtrialcox_pfizer_covidadmittedproxy1_age65plus-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidadmittedproxy1 age65plus-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidadmittedproxy1/age65plus-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidadmittedproxy1/age65plus-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/age65plus-TRUE/model_*.csv

  report_seqtrialcox_pfizer_covidadmittedproxy1_age65plus-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidadmittedproxy1 age65plus-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidadmittedproxy1_age65plus-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/age65plus-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidadmittedproxy1/age65plus-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidadmittedproxy1/age65plus-TRUE/report_*.png

  model_seqtrialcox_pfizer_covidadmitted_age65plus-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidadmitted age65plus-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidadmitted/age65plus-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidadmitted/age65plus-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidadmitted/age65plus-FALSE/model_*.csv

  report_seqtrialcox_pfizer_covidadmitted_age65plus-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidadmitted age65plus-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidadmitted_age65plus-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidadmitted/age65plus-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidadmitted/age65plus-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidadmitted/age65plus-FALSE/report_*.png

  model_seqtrialcox_pfizer_covidadmitted_age65plus-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidadmitted age65plus-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidadmitted/age65plus-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidadmitted/age65plus-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidadmitted/age65plus-TRUE/model_*.csv

  report_seqtrialcox_pfizer_covidadmitted_age65plus-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidadmitted age65plus-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidadmitted_age65plus-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidadmitted/age65plus-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidadmitted/age65plus-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidadmitted/age65plus-TRUE/report_*.png

  model_seqtrialcox_pfizer_noncovidadmitted_age65plus-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer noncovidadmitted age65plus-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/noncovidadmitted/age65plus-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/noncovidadmitted/age65plus-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/noncovidadmitted/age65plus-FALSE/model_*.csv

  report_seqtrialcox_pfizer_noncovidadmitted_age65plus-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer noncovidadmitted age65plus-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_noncovidadmitted_age65plus-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/noncovidadmitted/age65plus-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/noncovidadmitted/age65plus-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/noncovidadmitted/age65plus-FALSE/report_*.png

  model_seqtrialcox_pfizer_noncovidadmitted_age65plus-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer noncovidadmitted age65plus-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/noncovidadmitted/age65plus-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/noncovidadmitted/age65plus-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/noncovidadmitted/age65plus-TRUE/model_*.csv

  report_seqtrialcox_pfizer_noncovidadmitted_age65plus-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer noncovidadmitted age65plus-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_noncovidadmitted_age65plus-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/noncovidadmitted/age65plus-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/noncovidadmitted/age65plus-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/noncovidadmitted/age65plus-TRUE/report_*.png

  model_seqtrialcox_pfizer_covidcc_age65plus-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidcc age65plus-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidcc/age65plus-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidcc/age65plus-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidcc/age65plus-FALSE/model_*.csv

  report_seqtrialcox_pfizer_covidcc_age65plus-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidcc age65plus-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidcc_age65plus-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidcc/age65plus-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidcc/age65plus-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidcc/age65plus-FALSE/report_*.png

  model_seqtrialcox_pfizer_covidcc_age65plus-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidcc age65plus-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidcc/age65plus-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidcc/age65plus-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidcc/age65plus-TRUE/model_*.csv

  report_seqtrialcox_pfizer_covidcc_age65plus-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidcc age65plus-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidcc_age65plus-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidcc/age65plus-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidcc/age65plus-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidcc/age65plus-TRUE/report_*.png

  model_seqtrialcox_pfizer_coviddeath_age65plus-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer coviddeath age65plus-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/coviddeath/age65plus-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/coviddeath/age65plus-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/coviddeath/age65plus-FALSE/model_*.csv

  report_seqtrialcox_pfizer_coviddeath_age65plus-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer coviddeath age65plus-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_coviddeath_age65plus-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/coviddeath/age65plus-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/coviddeath/age65plus-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/coviddeath/age65plus-FALSE/report_*.png

  model_seqtrialcox_pfizer_coviddeath_age65plus-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer coviddeath age65plus-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/coviddeath/age65plus-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/coviddeath/age65plus-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/coviddeath/age65plus-TRUE/model_*.csv

  report_seqtrialcox_pfizer_coviddeath_age65plus-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer coviddeath age65plus-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_coviddeath_age65plus-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/coviddeath/age65plus-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/coviddeath/age65plus-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/coviddeath/age65plus-TRUE/report_*.png

  model_seqtrialcox_pfizer_noncoviddeath_age65plus-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer noncoviddeath age65plus-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/noncoviddeath/age65plus-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/noncoviddeath/age65plus-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/noncoviddeath/age65plus-FALSE/model_*.csv

  report_seqtrialcox_pfizer_noncoviddeath_age65plus-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer noncoviddeath age65plus-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_noncoviddeath_age65plus-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/noncoviddeath/age65plus-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/noncoviddeath/age65plus-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/noncoviddeath/age65plus-FALSE/report_*.png

  model_seqtrialcox_pfizer_noncoviddeath_age65plus-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer noncoviddeath age65plus-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/noncoviddeath/age65plus-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/noncoviddeath/age65plus-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/noncoviddeath/age65plus-TRUE/model_*.csv

  report_seqtrialcox_pfizer_noncoviddeath_age65plus-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer noncoviddeath age65plus-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_noncoviddeath_age65plus-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/noncoviddeath/age65plus-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/noncoviddeath/age65plus-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/noncoviddeath/age65plus-TRUE/report_*.png

  ## # # # # # # # # # # # # # # # # # # # 
  ## Moderna models 
  ## # # # # # # # # # # # # # # # # # # # 
  ## ### Overall models (''none'') 

  model_seqtrialcox_moderna_postest_none:
    run: r:latest analysis/model_seqtrialcox.R moderna postest none
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/postest/none/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/postest/none/model_*.txt
        csv: output/models/seqtrialcox/moderna/postest/none/model_*.csv

  report_seqtrialcox_moderna_postest_none:
    run: r:latest analysis/report_seqtrialcox.R moderna postest none
    needs:
    - data_selection
    - model_seqtrialcox_moderna_postest_none
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/postest/none/report_*.csv
        svg: output/models/seqtrialcox/moderna/postest/none/report_*.svg
        png: output/models/seqtrialcox/moderna/postest/none/report_*.png

  model_seqtrialcox_moderna_covidemergency_none:
    run: r:latest analysis/model_seqtrialcox.R moderna covidemergency none
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidemergency/none/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidemergency/none/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidemergency/none/model_*.csv

  report_seqtrialcox_moderna_covidemergency_none:
    run: r:latest analysis/report_seqtrialcox.R moderna covidemergency none
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidemergency_none
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidemergency/none/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidemergency/none/report_*.svg
        png: output/models/seqtrialcox/moderna/covidemergency/none/report_*.png

  model_seqtrialcox_moderna_covidadmittedproxy1_none:
    run: r:latest analysis/model_seqtrialcox.R moderna covidadmittedproxy1 none
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidadmittedproxy1/none/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidadmittedproxy1/none/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/none/model_*.csv

  report_seqtrialcox_moderna_covidadmittedproxy1_none:
    run: r:latest analysis/report_seqtrialcox.R moderna covidadmittedproxy1 none
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidadmittedproxy1_none
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/none/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidadmittedproxy1/none/report_*.svg
        png: output/models/seqtrialcox/moderna/covidadmittedproxy1/none/report_*.png

  model_seqtrialcox_moderna_covidadmitted_none:
    run: r:latest analysis/model_seqtrialcox.R moderna covidadmitted none
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidadmitted/none/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidadmitted/none/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidadmitted/none/model_*.csv

  report_seqtrialcox_moderna_covidadmitted_none:
    run: r:latest analysis/report_seqtrialcox.R moderna covidadmitted none
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidadmitted_none
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidadmitted/none/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidadmitted/none/report_*.svg
        png: output/models/seqtrialcox/moderna/covidadmitted/none/report_*.png

  model_seqtrialcox_moderna_noncovidadmitted_none:
    run: r:latest analysis/model_seqtrialcox.R moderna noncovidadmitted none
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/noncovidadmitted/none/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/noncovidadmitted/none/model_*.txt
        csv: output/models/seqtrialcox/moderna/noncovidadmitted/none/model_*.csv

  report_seqtrialcox_moderna_noncovidadmitted_none:
    run: r:latest analysis/report_seqtrialcox.R moderna noncovidadmitted none
    needs:
    - data_selection
    - model_seqtrialcox_moderna_noncovidadmitted_none
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/noncovidadmitted/none/report_*.csv
        svg: output/models/seqtrialcox/moderna/noncovidadmitted/none/report_*.svg
        png: output/models/seqtrialcox/moderna/noncovidadmitted/none/report_*.png

  model_seqtrialcox_moderna_covidcc_none:
    run: r:latest analysis/model_seqtrialcox.R moderna covidcc none
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidcc/none/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidcc/none/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidcc/none/model_*.csv

  report_seqtrialcox_moderna_covidcc_none:
    run: r:latest analysis/report_seqtrialcox.R moderna covidcc none
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidcc_none
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidcc/none/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidcc/none/report_*.svg
        png: output/models/seqtrialcox/moderna/covidcc/none/report_*.png

  model_seqtrialcox_moderna_coviddeath_none:
    run: r:latest analysis/model_seqtrialcox.R moderna coviddeath none
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/coviddeath/none/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/coviddeath/none/model_*.txt
        csv: output/models/seqtrialcox/moderna/coviddeath/none/model_*.csv

  report_seqtrialcox_moderna_coviddeath_none:
    run: r:latest analysis/report_seqtrialcox.R moderna coviddeath none
    needs:
    - data_selection
    - model_seqtrialcox_moderna_coviddeath_none
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/coviddeath/none/report_*.csv
        svg: output/models/seqtrialcox/moderna/coviddeath/none/report_*.svg
        png: output/models/seqtrialcox/moderna/coviddeath/none/report_*.png

  model_seqtrialcox_moderna_noncoviddeath_none:
    run: r:latest analysis/model_seqtrialcox.R moderna noncoviddeath none
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/noncoviddeath/none/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/noncoviddeath/none/model_*.txt
        csv: output/models/seqtrialcox/moderna/noncoviddeath/none/model_*.csv

  report_seqtrialcox_moderna_noncoviddeath_none:
    run: r:latest analysis/report_seqtrialcox.R moderna noncoviddeath none
    needs:
    - data_selection
    - model_seqtrialcox_moderna_noncoviddeath_none
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/noncoviddeath/none/report_*.csv
        svg: output/models/seqtrialcox/moderna/noncoviddeath/none/report_*.svg
        png: output/models/seqtrialcox/moderna/noncoviddeath/none/report_*.png

  ## ### Models by primary course (''vax12_type'') 

  model_seqtrialcox_moderna_postest_vax12_type-az-az:
    run: r:latest analysis/model_seqtrialcox.R moderna postest vax12_type-az-az
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/postest/vax12_type-az-az/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/postest/vax12_type-az-az/model_*.txt
        csv: output/models/seqtrialcox/moderna/postest/vax12_type-az-az/model_*.csv

  report_seqtrialcox_moderna_postest_vax12_type-az-az:
    run: r:latest analysis/report_seqtrialcox.R moderna postest vax12_type-az-az
    needs:
    - data_selection
    - model_seqtrialcox_moderna_postest_vax12_type-az-az
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/postest/vax12_type-az-az/report_*.csv
        svg: output/models/seqtrialcox/moderna/postest/vax12_type-az-az/report_*.svg
        png: output/models/seqtrialcox/moderna/postest/vax12_type-az-az/report_*.png

  model_seqtrialcox_moderna_postest_vax12_type-pfizer-pfizer:
    run: r:latest analysis/model_seqtrialcox.R moderna postest vax12_type-pfizer-pfizer
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/postest/vax12_type-pfizer-pfizer/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/postest/vax12_type-pfizer-pfizer/model_*.txt
        csv: output/models/seqtrialcox/moderna/postest/vax12_type-pfizer-pfizer/model_*.csv

  report_seqtrialcox_moderna_postest_vax12_type-pfizer-pfizer:
    run: r:latest analysis/report_seqtrialcox.R moderna postest vax12_type-pfizer-pfizer
    needs:
    - data_selection
    - model_seqtrialcox_moderna_postest_vax12_type-pfizer-pfizer
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/postest/vax12_type-pfizer-pfizer/report_*.csv
        svg: output/models/seqtrialcox/moderna/postest/vax12_type-pfizer-pfizer/report_*.svg
        png: output/models/seqtrialcox/moderna/postest/vax12_type-pfizer-pfizer/report_*.png

  model_seqtrialcox_moderna_covidemergency_vax12_type-az-az:
    run: r:latest analysis/model_seqtrialcox.R moderna covidemergency vax12_type-az-az
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidemergency/vax12_type-az-az/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidemergency/vax12_type-az-az/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidemergency/vax12_type-az-az/model_*.csv

  report_seqtrialcox_moderna_covidemergency_vax12_type-az-az:
    run: r:latest analysis/report_seqtrialcox.R moderna covidemergency vax12_type-az-az
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidemergency_vax12_type-az-az
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidemergency/vax12_type-az-az/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidemergency/vax12_type-az-az/report_*.svg
        png: output/models/seqtrialcox/moderna/covidemergency/vax12_type-az-az/report_*.png

  model_seqtrialcox_moderna_covidemergency_vax12_type-pfizer-pfizer:
    run: r:latest analysis/model_seqtrialcox.R moderna covidemergency vax12_type-pfizer-pfizer
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidemergency/vax12_type-pfizer-pfizer/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidemergency/vax12_type-pfizer-pfizer/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidemergency/vax12_type-pfizer-pfizer/model_*.csv

  report_seqtrialcox_moderna_covidemergency_vax12_type-pfizer-pfizer:
    run: r:latest analysis/report_seqtrialcox.R moderna covidemergency vax12_type-pfizer-pfizer
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidemergency_vax12_type-pfizer-pfizer
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidemergency/vax12_type-pfizer-pfizer/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidemergency/vax12_type-pfizer-pfizer/report_*.svg
        png: output/models/seqtrialcox/moderna/covidemergency/vax12_type-pfizer-pfizer/report_*.png

  model_seqtrialcox_moderna_covidadmittedproxy1_vax12_type-az-az:
    run: r:latest analysis/model_seqtrialcox.R moderna covidadmittedproxy1 vax12_type-az-az
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidadmittedproxy1/vax12_type-az-az/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidadmittedproxy1/vax12_type-az-az/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/vax12_type-az-az/model_*.csv

  report_seqtrialcox_moderna_covidadmittedproxy1_vax12_type-az-az:
    run: r:latest analysis/report_seqtrialcox.R moderna covidadmittedproxy1 vax12_type-az-az
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidadmittedproxy1_vax12_type-az-az
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/vax12_type-az-az/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidadmittedproxy1/vax12_type-az-az/report_*.svg
        png: output/models/seqtrialcox/moderna/covidadmittedproxy1/vax12_type-az-az/report_*.png

  model_seqtrialcox_moderna_covidadmittedproxy1_vax12_type-pfizer-pfizer:
    run: r:latest analysis/model_seqtrialcox.R moderna covidadmittedproxy1 vax12_type-pfizer-pfizer
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidadmittedproxy1/vax12_type-pfizer-pfizer/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidadmittedproxy1/vax12_type-pfizer-pfizer/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/vax12_type-pfizer-pfizer/model_*.csv

  report_seqtrialcox_moderna_covidadmittedproxy1_vax12_type-pfizer-pfizer:
    run: r:latest analysis/report_seqtrialcox.R moderna covidadmittedproxy1 vax12_type-pfizer-pfizer
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidadmittedproxy1_vax12_type-pfizer-pfizer
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/vax12_type-pfizer-pfizer/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidadmittedproxy1/vax12_type-pfizer-pfizer/report_*.svg
        png: output/models/seqtrialcox/moderna/covidadmittedproxy1/vax12_type-pfizer-pfizer/report_*.png

  model_seqtrialcox_moderna_covidadmitted_vax12_type-az-az:
    run: r:latest analysis/model_seqtrialcox.R moderna covidadmitted vax12_type-az-az
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidadmitted/vax12_type-az-az/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidadmitted/vax12_type-az-az/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidadmitted/vax12_type-az-az/model_*.csv

  report_seqtrialcox_moderna_covidadmitted_vax12_type-az-az:
    run: r:latest analysis/report_seqtrialcox.R moderna covidadmitted vax12_type-az-az
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidadmitted_vax12_type-az-az
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidadmitted/vax12_type-az-az/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidadmitted/vax12_type-az-az/report_*.svg
        png: output/models/seqtrialcox/moderna/covidadmitted/vax12_type-az-az/report_*.png

  model_seqtrialcox_moderna_covidadmitted_vax12_type-pfizer-pfizer:
    run: r:latest analysis/model_seqtrialcox.R moderna covidadmitted vax12_type-pfizer-pfizer
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidadmitted/vax12_type-pfizer-pfizer/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidadmitted/vax12_type-pfizer-pfizer/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidadmitted/vax12_type-pfizer-pfizer/model_*.csv

  report_seqtrialcox_moderna_covidadmitted_vax12_type-pfizer-pfizer:
    run: r:latest analysis/report_seqtrialcox.R moderna covidadmitted vax12_type-pfizer-pfizer
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidadmitted_vax12_type-pfizer-pfizer
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidadmitted/vax12_type-pfizer-pfizer/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidadmitted/vax12_type-pfizer-pfizer/report_*.svg
        png: output/models/seqtrialcox/moderna/covidadmitted/vax12_type-pfizer-pfizer/report_*.png

  model_seqtrialcox_moderna_noncovidadmitted_vax12_type-az-az:
    run: r:latest analysis/model_seqtrialcox.R moderna noncovidadmitted vax12_type-az-az
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/noncovidadmitted/vax12_type-az-az/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/noncovidadmitted/vax12_type-az-az/model_*.txt
        csv: output/models/seqtrialcox/moderna/noncovidadmitted/vax12_type-az-az/model_*.csv

  report_seqtrialcox_moderna_noncovidadmitted_vax12_type-az-az:
    run: r:latest analysis/report_seqtrialcox.R moderna noncovidadmitted vax12_type-az-az
    needs:
    - data_selection
    - model_seqtrialcox_moderna_noncovidadmitted_vax12_type-az-az
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/noncovidadmitted/vax12_type-az-az/report_*.csv
        svg: output/models/seqtrialcox/moderna/noncovidadmitted/vax12_type-az-az/report_*.svg
        png: output/models/seqtrialcox/moderna/noncovidadmitted/vax12_type-az-az/report_*.png

  model_seqtrialcox_moderna_noncovidadmitted_vax12_type-pfizer-pfizer:
    run: r:latest analysis/model_seqtrialcox.R moderna noncovidadmitted vax12_type-pfizer-pfizer
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/noncovidadmitted/vax12_type-pfizer-pfizer/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/noncovidadmitted/vax12_type-pfizer-pfizer/model_*.txt
        csv: output/models/seqtrialcox/moderna/noncovidadmitted/vax12_type-pfizer-pfizer/model_*.csv

  report_seqtrialcox_moderna_noncovidadmitted_vax12_type-pfizer-pfizer:
    run: r:latest analysis/report_seqtrialcox.R moderna noncovidadmitted vax12_type-pfizer-pfizer
    needs:
    - data_selection
    - model_seqtrialcox_moderna_noncovidadmitted_vax12_type-pfizer-pfizer
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/noncovidadmitted/vax12_type-pfizer-pfizer/report_*.csv
        svg: output/models/seqtrialcox/moderna/noncovidadmitted/vax12_type-pfizer-pfizer/report_*.svg
        png: output/models/seqtrialcox/moderna/noncovidadmitted/vax12_type-pfizer-pfizer/report_*.png

  model_seqtrialcox_moderna_covidcc_vax12_type-az-az:
    run: r:latest analysis/model_seqtrialcox.R moderna covidcc vax12_type-az-az
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidcc/vax12_type-az-az/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidcc/vax12_type-az-az/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidcc/vax12_type-az-az/model_*.csv

  report_seqtrialcox_moderna_covidcc_vax12_type-az-az:
    run: r:latest analysis/report_seqtrialcox.R moderna covidcc vax12_type-az-az
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidcc_vax12_type-az-az
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidcc/vax12_type-az-az/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidcc/vax12_type-az-az/report_*.svg
        png: output/models/seqtrialcox/moderna/covidcc/vax12_type-az-az/report_*.png

  model_seqtrialcox_moderna_covidcc_vax12_type-pfizer-pfizer:
    run: r:latest analysis/model_seqtrialcox.R moderna covidcc vax12_type-pfizer-pfizer
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidcc/vax12_type-pfizer-pfizer/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidcc/vax12_type-pfizer-pfizer/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidcc/vax12_type-pfizer-pfizer/model_*.csv

  report_seqtrialcox_moderna_covidcc_vax12_type-pfizer-pfizer:
    run: r:latest analysis/report_seqtrialcox.R moderna covidcc vax12_type-pfizer-pfizer
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidcc_vax12_type-pfizer-pfizer
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidcc/vax12_type-pfizer-pfizer/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidcc/vax12_type-pfizer-pfizer/report_*.svg
        png: output/models/seqtrialcox/moderna/covidcc/vax12_type-pfizer-pfizer/report_*.png

  model_seqtrialcox_moderna_coviddeath_vax12_type-az-az:
    run: r:latest analysis/model_seqtrialcox.R moderna coviddeath vax12_type-az-az
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/coviddeath/vax12_type-az-az/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/coviddeath/vax12_type-az-az/model_*.txt
        csv: output/models/seqtrialcox/moderna/coviddeath/vax12_type-az-az/model_*.csv

  report_seqtrialcox_moderna_coviddeath_vax12_type-az-az:
    run: r:latest analysis/report_seqtrialcox.R moderna coviddeath vax12_type-az-az
    needs:
    - data_selection
    - model_seqtrialcox_moderna_coviddeath_vax12_type-az-az
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/coviddeath/vax12_type-az-az/report_*.csv
        svg: output/models/seqtrialcox/moderna/coviddeath/vax12_type-az-az/report_*.svg
        png: output/models/seqtrialcox/moderna/coviddeath/vax12_type-az-az/report_*.png

  model_seqtrialcox_moderna_coviddeath_vax12_type-pfizer-pfizer:
    run: r:latest analysis/model_seqtrialcox.R moderna coviddeath vax12_type-pfizer-pfizer
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/coviddeath/vax12_type-pfizer-pfizer/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/coviddeath/vax12_type-pfizer-pfizer/model_*.txt
        csv: output/models/seqtrialcox/moderna/coviddeath/vax12_type-pfizer-pfizer/model_*.csv

  report_seqtrialcox_moderna_coviddeath_vax12_type-pfizer-pfizer:
    run: r:latest analysis/report_seqtrialcox.R moderna coviddeath vax12_type-pfizer-pfizer
    needs:
    - data_selection
    - model_seqtrialcox_moderna_coviddeath_vax12_type-pfizer-pfizer
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/coviddeath/vax12_type-pfizer-pfizer/report_*.csv
        svg: output/models/seqtrialcox/moderna/coviddeath/vax12_type-pfizer-pfizer/report_*.svg
        png: output/models/seqtrialcox/moderna/coviddeath/vax12_type-pfizer-pfizer/report_*.png

  model_seqtrialcox_moderna_noncoviddeath_vax12_type-az-az:
    run: r:latest analysis/model_seqtrialcox.R moderna noncoviddeath vax12_type-az-az
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/noncoviddeath/vax12_type-az-az/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/noncoviddeath/vax12_type-az-az/model_*.txt
        csv: output/models/seqtrialcox/moderna/noncoviddeath/vax12_type-az-az/model_*.csv

  report_seqtrialcox_moderna_noncoviddeath_vax12_type-az-az:
    run: r:latest analysis/report_seqtrialcox.R moderna noncoviddeath vax12_type-az-az
    needs:
    - data_selection
    - model_seqtrialcox_moderna_noncoviddeath_vax12_type-az-az
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/noncoviddeath/vax12_type-az-az/report_*.csv
        svg: output/models/seqtrialcox/moderna/noncoviddeath/vax12_type-az-az/report_*.svg
        png: output/models/seqtrialcox/moderna/noncoviddeath/vax12_type-az-az/report_*.png

  model_seqtrialcox_moderna_noncoviddeath_vax12_type-pfizer-pfizer:
    run: r:latest analysis/model_seqtrialcox.R moderna noncoviddeath vax12_type-pfizer-pfizer
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/noncoviddeath/vax12_type-pfizer-pfizer/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/noncoviddeath/vax12_type-pfizer-pfizer/model_*.txt
        csv: output/models/seqtrialcox/moderna/noncoviddeath/vax12_type-pfizer-pfizer/model_*.csv

  report_seqtrialcox_moderna_noncoviddeath_vax12_type-pfizer-pfizer:
    run: r:latest analysis/report_seqtrialcox.R moderna noncoviddeath vax12_type-pfizer-pfizer
    needs:
    - data_selection
    - model_seqtrialcox_moderna_noncoviddeath_vax12_type-pfizer-pfizer
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/noncoviddeath/vax12_type-pfizer-pfizer/report_*.csv
        svg: output/models/seqtrialcox/moderna/noncoviddeath/vax12_type-pfizer-pfizer/report_*.svg
        png: output/models/seqtrialcox/moderna/noncoviddeath/vax12_type-pfizer-pfizer/report_*.png

  ## ### Models by clinical extremely vulnerable (''cev'') 

  model_seqtrialcox_moderna_postest_cev-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna postest cev-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/postest/cev-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/postest/cev-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/postest/cev-FALSE/model_*.csv

  report_seqtrialcox_moderna_postest_cev-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna postest cev-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_postest_cev-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/postest/cev-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/postest/cev-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/postest/cev-FALSE/report_*.png

  model_seqtrialcox_moderna_postest_cev-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna postest cev-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/postest/cev-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/postest/cev-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/postest/cev-TRUE/model_*.csv

  report_seqtrialcox_moderna_postest_cev-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna postest cev-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_postest_cev-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/postest/cev-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/postest/cev-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/postest/cev-TRUE/report_*.png

  model_seqtrialcox_moderna_covidemergency_cev-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidemergency cev-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidemergency/cev-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidemergency/cev-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidemergency/cev-FALSE/model_*.csv

  report_seqtrialcox_moderna_covidemergency_cev-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidemergency cev-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidemergency_cev-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidemergency/cev-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidemergency/cev-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidemergency/cev-FALSE/report_*.png

  model_seqtrialcox_moderna_covidemergency_cev-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidemergency cev-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidemergency/cev-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidemergency/cev-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidemergency/cev-TRUE/model_*.csv

  report_seqtrialcox_moderna_covidemergency_cev-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidemergency cev-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidemergency_cev-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidemergency/cev-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidemergency/cev-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidemergency/cev-TRUE/report_*.png

  model_seqtrialcox_moderna_covidadmittedproxy1_cev-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidadmittedproxy1 cev-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidadmittedproxy1/cev-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidadmittedproxy1/cev-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/cev-FALSE/model_*.csv

  report_seqtrialcox_moderna_covidadmittedproxy1_cev-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidadmittedproxy1 cev-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidadmittedproxy1_cev-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/cev-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidadmittedproxy1/cev-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidadmittedproxy1/cev-FALSE/report_*.png

  model_seqtrialcox_moderna_covidadmittedproxy1_cev-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidadmittedproxy1 cev-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidadmittedproxy1/cev-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidadmittedproxy1/cev-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/cev-TRUE/model_*.csv

  report_seqtrialcox_moderna_covidadmittedproxy1_cev-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidadmittedproxy1 cev-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidadmittedproxy1_cev-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/cev-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidadmittedproxy1/cev-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidadmittedproxy1/cev-TRUE/report_*.png

  model_seqtrialcox_moderna_covidadmitted_cev-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidadmitted cev-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidadmitted/cev-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidadmitted/cev-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidadmitted/cev-FALSE/model_*.csv

  report_seqtrialcox_moderna_covidadmitted_cev-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidadmitted cev-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidadmitted_cev-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidadmitted/cev-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidadmitted/cev-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidadmitted/cev-FALSE/report_*.png

  model_seqtrialcox_moderna_covidadmitted_cev-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidadmitted cev-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidadmitted/cev-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidadmitted/cev-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidadmitted/cev-TRUE/model_*.csv

  report_seqtrialcox_moderna_covidadmitted_cev-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidadmitted cev-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidadmitted_cev-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidadmitted/cev-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidadmitted/cev-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidadmitted/cev-TRUE/report_*.png

  model_seqtrialcox_moderna_noncovidadmitted_cev-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna noncovidadmitted cev-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/noncovidadmitted/cev-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/noncovidadmitted/cev-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/noncovidadmitted/cev-FALSE/model_*.csv

  report_seqtrialcox_moderna_noncovidadmitted_cev-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna noncovidadmitted cev-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_noncovidadmitted_cev-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/noncovidadmitted/cev-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/noncovidadmitted/cev-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/noncovidadmitted/cev-FALSE/report_*.png

  model_seqtrialcox_moderna_noncovidadmitted_cev-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna noncovidadmitted cev-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/noncovidadmitted/cev-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/noncovidadmitted/cev-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/noncovidadmitted/cev-TRUE/model_*.csv

  report_seqtrialcox_moderna_noncovidadmitted_cev-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna noncovidadmitted cev-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_noncovidadmitted_cev-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/noncovidadmitted/cev-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/noncovidadmitted/cev-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/noncovidadmitted/cev-TRUE/report_*.png

  model_seqtrialcox_moderna_covidcc_cev-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidcc cev-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidcc/cev-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidcc/cev-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidcc/cev-FALSE/model_*.csv

  report_seqtrialcox_moderna_covidcc_cev-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidcc cev-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidcc_cev-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidcc/cev-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidcc/cev-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidcc/cev-FALSE/report_*.png

  model_seqtrialcox_moderna_covidcc_cev-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidcc cev-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidcc/cev-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidcc/cev-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidcc/cev-TRUE/model_*.csv

  report_seqtrialcox_moderna_covidcc_cev-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidcc cev-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidcc_cev-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidcc/cev-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidcc/cev-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidcc/cev-TRUE/report_*.png

  model_seqtrialcox_moderna_coviddeath_cev-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna coviddeath cev-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/coviddeath/cev-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/coviddeath/cev-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/coviddeath/cev-FALSE/model_*.csv

  report_seqtrialcox_moderna_coviddeath_cev-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna coviddeath cev-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_coviddeath_cev-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/coviddeath/cev-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/coviddeath/cev-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/coviddeath/cev-FALSE/report_*.png

  model_seqtrialcox_moderna_coviddeath_cev-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna coviddeath cev-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/coviddeath/cev-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/coviddeath/cev-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/coviddeath/cev-TRUE/model_*.csv

  report_seqtrialcox_moderna_coviddeath_cev-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna coviddeath cev-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_coviddeath_cev-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/coviddeath/cev-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/coviddeath/cev-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/coviddeath/cev-TRUE/report_*.png

  model_seqtrialcox_moderna_noncoviddeath_cev-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna noncoviddeath cev-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/noncoviddeath/cev-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/noncoviddeath/cev-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/noncoviddeath/cev-FALSE/model_*.csv

  report_seqtrialcox_moderna_noncoviddeath_cev-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna noncoviddeath cev-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_noncoviddeath_cev-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/noncoviddeath/cev-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/noncoviddeath/cev-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/noncoviddeath/cev-FALSE/report_*.png

  model_seqtrialcox_moderna_noncoviddeath_cev-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna noncoviddeath cev-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/noncoviddeath/cev-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/noncoviddeath/cev-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/noncoviddeath/cev-TRUE/model_*.csv

  report_seqtrialcox_moderna_noncoviddeath_cev-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna noncoviddeath cev-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_noncoviddeath_cev-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/noncoviddeath/cev-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/noncoviddeath/cev-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/noncoviddeath/cev-TRUE/report_*.png

  ## ### Models by prior infection (''prior_covid_infection'') 

  model_seqtrialcox_moderna_postest_prior_covid_infection-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna postest prior_covid_infection-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/postest/prior_covid_infection-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/postest/prior_covid_infection-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/postest/prior_covid_infection-FALSE/model_*.csv

  report_seqtrialcox_moderna_postest_prior_covid_infection-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna postest prior_covid_infection-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_postest_prior_covid_infection-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/postest/prior_covid_infection-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/postest/prior_covid_infection-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/postest/prior_covid_infection-FALSE/report_*.png

  model_seqtrialcox_moderna_postest_prior_covid_infection-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna postest prior_covid_infection-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/postest/prior_covid_infection-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/postest/prior_covid_infection-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/postest/prior_covid_infection-TRUE/model_*.csv

  report_seqtrialcox_moderna_postest_prior_covid_infection-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna postest prior_covid_infection-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_postest_prior_covid_infection-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/postest/prior_covid_infection-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/postest/prior_covid_infection-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/postest/prior_covid_infection-TRUE/report_*.png

  model_seqtrialcox_moderna_covidemergency_prior_covid_infection-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidemergency prior_covid_infection-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidemergency/prior_covid_infection-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidemergency/prior_covid_infection-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidemergency/prior_covid_infection-FALSE/model_*.csv

  report_seqtrialcox_moderna_covidemergency_prior_covid_infection-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidemergency prior_covid_infection-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidemergency_prior_covid_infection-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidemergency/prior_covid_infection-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidemergency/prior_covid_infection-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidemergency/prior_covid_infection-FALSE/report_*.png

  model_seqtrialcox_moderna_covidemergency_prior_covid_infection-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidemergency prior_covid_infection-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidemergency/prior_covid_infection-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidemergency/prior_covid_infection-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidemergency/prior_covid_infection-TRUE/model_*.csv

  report_seqtrialcox_moderna_covidemergency_prior_covid_infection-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidemergency prior_covid_infection-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidemergency_prior_covid_infection-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidemergency/prior_covid_infection-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidemergency/prior_covid_infection-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidemergency/prior_covid_infection-TRUE/report_*.png

  model_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidadmittedproxy1 prior_covid_infection-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidadmittedproxy1/prior_covid_infection-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidadmittedproxy1/prior_covid_infection-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/prior_covid_infection-FALSE/model_*.csv

  report_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidadmittedproxy1 prior_covid_infection-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/prior_covid_infection-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidadmittedproxy1/prior_covid_infection-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidadmittedproxy1/prior_covid_infection-FALSE/report_*.png

  model_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidadmittedproxy1 prior_covid_infection-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidadmittedproxy1/prior_covid_infection-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidadmittedproxy1/prior_covid_infection-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/prior_covid_infection-TRUE/model_*.csv

  report_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidadmittedproxy1 prior_covid_infection-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/prior_covid_infection-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidadmittedproxy1/prior_covid_infection-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidadmittedproxy1/prior_covid_infection-TRUE/report_*.png

  model_seqtrialcox_moderna_covidadmitted_prior_covid_infection-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidadmitted prior_covid_infection-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidadmitted/prior_covid_infection-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidadmitted/prior_covid_infection-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidadmitted/prior_covid_infection-FALSE/model_*.csv

  report_seqtrialcox_moderna_covidadmitted_prior_covid_infection-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidadmitted prior_covid_infection-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidadmitted_prior_covid_infection-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidadmitted/prior_covid_infection-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidadmitted/prior_covid_infection-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidadmitted/prior_covid_infection-FALSE/report_*.png

  model_seqtrialcox_moderna_covidadmitted_prior_covid_infection-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidadmitted prior_covid_infection-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidadmitted/prior_covid_infection-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidadmitted/prior_covid_infection-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidadmitted/prior_covid_infection-TRUE/model_*.csv

  report_seqtrialcox_moderna_covidadmitted_prior_covid_infection-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidadmitted prior_covid_infection-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidadmitted_prior_covid_infection-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidadmitted/prior_covid_infection-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidadmitted/prior_covid_infection-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidadmitted/prior_covid_infection-TRUE/report_*.png

  model_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna noncovidadmitted prior_covid_infection-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/noncovidadmitted/prior_covid_infection-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/noncovidadmitted/prior_covid_infection-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/noncovidadmitted/prior_covid_infection-FALSE/model_*.csv

  report_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna noncovidadmitted prior_covid_infection-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/noncovidadmitted/prior_covid_infection-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/noncovidadmitted/prior_covid_infection-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/noncovidadmitted/prior_covid_infection-FALSE/report_*.png

  model_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna noncovidadmitted prior_covid_infection-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/noncovidadmitted/prior_covid_infection-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/noncovidadmitted/prior_covid_infection-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/noncovidadmitted/prior_covid_infection-TRUE/model_*.csv

  report_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna noncovidadmitted prior_covid_infection-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/noncovidadmitted/prior_covid_infection-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/noncovidadmitted/prior_covid_infection-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/noncovidadmitted/prior_covid_infection-TRUE/report_*.png

  model_seqtrialcox_moderna_covidcc_prior_covid_infection-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidcc prior_covid_infection-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidcc/prior_covid_infection-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidcc/prior_covid_infection-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidcc/prior_covid_infection-FALSE/model_*.csv

  report_seqtrialcox_moderna_covidcc_prior_covid_infection-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidcc prior_covid_infection-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidcc_prior_covid_infection-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidcc/prior_covid_infection-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidcc/prior_covid_infection-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidcc/prior_covid_infection-FALSE/report_*.png

  model_seqtrialcox_moderna_covidcc_prior_covid_infection-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidcc prior_covid_infection-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidcc/prior_covid_infection-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidcc/prior_covid_infection-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidcc/prior_covid_infection-TRUE/model_*.csv

  report_seqtrialcox_moderna_covidcc_prior_covid_infection-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidcc prior_covid_infection-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidcc_prior_covid_infection-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidcc/prior_covid_infection-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidcc/prior_covid_infection-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidcc/prior_covid_infection-TRUE/report_*.png

  model_seqtrialcox_moderna_coviddeath_prior_covid_infection-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna coviddeath prior_covid_infection-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/coviddeath/prior_covid_infection-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/coviddeath/prior_covid_infection-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/coviddeath/prior_covid_infection-FALSE/model_*.csv

  report_seqtrialcox_moderna_coviddeath_prior_covid_infection-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna coviddeath prior_covid_infection-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_coviddeath_prior_covid_infection-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/coviddeath/prior_covid_infection-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/coviddeath/prior_covid_infection-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/coviddeath/prior_covid_infection-FALSE/report_*.png

  model_seqtrialcox_moderna_coviddeath_prior_covid_infection-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna coviddeath prior_covid_infection-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/coviddeath/prior_covid_infection-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/coviddeath/prior_covid_infection-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/coviddeath/prior_covid_infection-TRUE/model_*.csv

  report_seqtrialcox_moderna_coviddeath_prior_covid_infection-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna coviddeath prior_covid_infection-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_coviddeath_prior_covid_infection-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/coviddeath/prior_covid_infection-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/coviddeath/prior_covid_infection-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/coviddeath/prior_covid_infection-TRUE/report_*.png

  model_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna noncoviddeath prior_covid_infection-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/noncoviddeath/prior_covid_infection-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/noncoviddeath/prior_covid_infection-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/noncoviddeath/prior_covid_infection-FALSE/model_*.csv

  report_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna noncoviddeath prior_covid_infection-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/noncoviddeath/prior_covid_infection-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/noncoviddeath/prior_covid_infection-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/noncoviddeath/prior_covid_infection-FALSE/report_*.png

  model_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna noncoviddeath prior_covid_infection-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/noncoviddeath/prior_covid_infection-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/noncoviddeath/prior_covid_infection-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/noncoviddeath/prior_covid_infection-TRUE/model_*.csv

  report_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna noncoviddeath prior_covid_infection-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/noncoviddeath/prior_covid_infection-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/noncoviddeath/prior_covid_infection-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/noncoviddeath/prior_covid_infection-TRUE/report_*.png

  ## ### Models by age (''age65plus'') 

  model_seqtrialcox_moderna_postest_age65plus-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna postest age65plus-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/postest/age65plus-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/postest/age65plus-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/postest/age65plus-FALSE/model_*.csv

  report_seqtrialcox_moderna_postest_age65plus-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna postest age65plus-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_postest_age65plus-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/postest/age65plus-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/postest/age65plus-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/postest/age65plus-FALSE/report_*.png

  model_seqtrialcox_moderna_postest_age65plus-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna postest age65plus-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/postest/age65plus-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/postest/age65plus-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/postest/age65plus-TRUE/model_*.csv

  report_seqtrialcox_moderna_postest_age65plus-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna postest age65plus-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_postest_age65plus-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/postest/age65plus-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/postest/age65plus-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/postest/age65plus-TRUE/report_*.png

  model_seqtrialcox_moderna_covidemergency_age65plus-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidemergency age65plus-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidemergency/age65plus-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidemergency/age65plus-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidemergency/age65plus-FALSE/model_*.csv

  report_seqtrialcox_moderna_covidemergency_age65plus-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidemergency age65plus-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidemergency_age65plus-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidemergency/age65plus-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidemergency/age65plus-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidemergency/age65plus-FALSE/report_*.png

  model_seqtrialcox_moderna_covidemergency_age65plus-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidemergency age65plus-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidemergency/age65plus-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidemergency/age65plus-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidemergency/age65plus-TRUE/model_*.csv

  report_seqtrialcox_moderna_covidemergency_age65plus-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidemergency age65plus-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidemergency_age65plus-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidemergency/age65plus-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidemergency/age65plus-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidemergency/age65plus-TRUE/report_*.png

  model_seqtrialcox_moderna_covidadmittedproxy1_age65plus-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidadmittedproxy1 age65plus-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidadmittedproxy1/age65plus-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidadmittedproxy1/age65plus-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/age65plus-FALSE/model_*.csv

  report_seqtrialcox_moderna_covidadmittedproxy1_age65plus-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidadmittedproxy1 age65plus-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidadmittedproxy1_age65plus-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/age65plus-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidadmittedproxy1/age65plus-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidadmittedproxy1/age65plus-FALSE/report_*.png

  model_seqtrialcox_moderna_covidadmittedproxy1_age65plus-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidadmittedproxy1 age65plus-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidadmittedproxy1/age65plus-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidadmittedproxy1/age65plus-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/age65plus-TRUE/model_*.csv

  report_seqtrialcox_moderna_covidadmittedproxy1_age65plus-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidadmittedproxy1 age65plus-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidadmittedproxy1_age65plus-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/age65plus-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidadmittedproxy1/age65plus-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidadmittedproxy1/age65plus-TRUE/report_*.png

  model_seqtrialcox_moderna_covidadmitted_age65plus-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidadmitted age65plus-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidadmitted/age65plus-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidadmitted/age65plus-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidadmitted/age65plus-FALSE/model_*.csv

  report_seqtrialcox_moderna_covidadmitted_age65plus-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidadmitted age65plus-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidadmitted_age65plus-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidadmitted/age65plus-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidadmitted/age65plus-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidadmitted/age65plus-FALSE/report_*.png

  model_seqtrialcox_moderna_covidadmitted_age65plus-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidadmitted age65plus-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidadmitted/age65plus-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidadmitted/age65plus-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidadmitted/age65plus-TRUE/model_*.csv

  report_seqtrialcox_moderna_covidadmitted_age65plus-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidadmitted age65plus-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidadmitted_age65plus-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidadmitted/age65plus-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidadmitted/age65plus-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidadmitted/age65plus-TRUE/report_*.png

  model_seqtrialcox_moderna_noncovidadmitted_age65plus-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna noncovidadmitted age65plus-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/noncovidadmitted/age65plus-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/noncovidadmitted/age65plus-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/noncovidadmitted/age65plus-FALSE/model_*.csv

  report_seqtrialcox_moderna_noncovidadmitted_age65plus-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna noncovidadmitted age65plus-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_noncovidadmitted_age65plus-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/noncovidadmitted/age65plus-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/noncovidadmitted/age65plus-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/noncovidadmitted/age65plus-FALSE/report_*.png

  model_seqtrialcox_moderna_noncovidadmitted_age65plus-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna noncovidadmitted age65plus-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/noncovidadmitted/age65plus-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/noncovidadmitted/age65plus-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/noncovidadmitted/age65plus-TRUE/model_*.csv

  report_seqtrialcox_moderna_noncovidadmitted_age65plus-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna noncovidadmitted age65plus-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_noncovidadmitted_age65plus-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/noncovidadmitted/age65plus-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/noncovidadmitted/age65plus-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/noncovidadmitted/age65plus-TRUE/report_*.png

  model_seqtrialcox_moderna_covidcc_age65plus-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidcc age65plus-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidcc/age65plus-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidcc/age65plus-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidcc/age65plus-FALSE/model_*.csv

  report_seqtrialcox_moderna_covidcc_age65plus-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidcc age65plus-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidcc_age65plus-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidcc/age65plus-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidcc/age65plus-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidcc/age65plus-FALSE/report_*.png

  model_seqtrialcox_moderna_covidcc_age65plus-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidcc age65plus-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidcc/age65plus-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidcc/age65plus-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidcc/age65plus-TRUE/model_*.csv

  report_seqtrialcox_moderna_covidcc_age65plus-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidcc age65plus-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidcc_age65plus-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidcc/age65plus-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidcc/age65plus-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidcc/age65plus-TRUE/report_*.png

  model_seqtrialcox_moderna_coviddeath_age65plus-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna coviddeath age65plus-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/coviddeath/age65plus-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/coviddeath/age65plus-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/coviddeath/age65plus-FALSE/model_*.csv

  report_seqtrialcox_moderna_coviddeath_age65plus-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna coviddeath age65plus-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_coviddeath_age65plus-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/coviddeath/age65plus-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/coviddeath/age65plus-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/coviddeath/age65plus-FALSE/report_*.png

  model_seqtrialcox_moderna_coviddeath_age65plus-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna coviddeath age65plus-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/coviddeath/age65plus-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/coviddeath/age65plus-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/coviddeath/age65plus-TRUE/model_*.csv

  report_seqtrialcox_moderna_coviddeath_age65plus-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna coviddeath age65plus-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_coviddeath_age65plus-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/coviddeath/age65plus-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/coviddeath/age65plus-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/coviddeath/age65plus-TRUE/report_*.png

  model_seqtrialcox_moderna_noncoviddeath_age65plus-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna noncoviddeath age65plus-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/noncoviddeath/age65plus-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/noncoviddeath/age65plus-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/noncoviddeath/age65plus-FALSE/model_*.csv

  report_seqtrialcox_moderna_noncoviddeath_age65plus-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna noncoviddeath age65plus-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_noncoviddeath_age65plus-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/noncoviddeath/age65plus-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/noncoviddeath/age65plus-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/noncoviddeath/age65plus-FALSE/report_*.png

  model_seqtrialcox_moderna_noncoviddeath_age65plus-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna noncoviddeath age65plus-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/noncoviddeath/age65plus-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/noncoviddeath/age65plus-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/noncoviddeath/age65plus-TRUE/model_*.csv

  report_seqtrialcox_moderna_noncoviddeath_age65plus-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna noncoviddeath age65plus-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_noncoviddeath_age65plus-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/noncoviddeath/age65plus-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/noncoviddeath/age65plus-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/noncoviddeath/age65plus-TRUE/report_*.png

  ## # # # # # # # # # # # # # # # # # # # 
  ## Combine models across treatments and outcomes 
  ## # # # # # # # # # # # # # # # # # # # 

  combine_model_none:
    run: r:latest analysis/combine_model.R none
    needs:
    - match_seqtrialcox_pfizer
    - match_seqtrialcox_moderna
    - model_seqtrialcox_pfizer_postest_none
    - report_seqtrialcox_pfizer_postest_none
    - model_seqtrialcox_pfizer_covidemergency_none
    - report_seqtrialcox_pfizer_covidemergency_none
    - model_seqtrialcox_pfizer_covidadmittedproxy1_none
    - report_seqtrialcox_pfizer_covidadmittedproxy1_none
    - model_seqtrialcox_pfizer_covidadmitted_none
    - report_seqtrialcox_pfizer_covidadmitted_none
    - model_seqtrialcox_pfizer_noncovidadmitted_none
    - report_seqtrialcox_pfizer_noncovidadmitted_none
    - model_seqtrialcox_pfizer_coviddeath_none
    - report_seqtrialcox_pfizer_coviddeath_none
    - model_seqtrialcox_pfizer_noncoviddeath_none
    - report_seqtrialcox_pfizer_noncoviddeath_none
    - model_seqtrialcox_moderna_postest_none
    - report_seqtrialcox_moderna_postest_none
    - model_seqtrialcox_moderna_covidemergency_none
    - report_seqtrialcox_moderna_covidemergency_none
    - model_seqtrialcox_moderna_covidadmittedproxy1_none
    - report_seqtrialcox_moderna_covidadmittedproxy1_none
    - model_seqtrialcox_moderna_covidadmitted_none
    - report_seqtrialcox_moderna_covidadmitted_none
    - model_seqtrialcox_moderna_noncovidadmitted_none
    - report_seqtrialcox_moderna_noncovidadmitted_none
    - model_seqtrialcox_moderna_coviddeath_none
    - report_seqtrialcox_moderna_coviddeath_none
    - model_seqtrialcox_moderna_noncoviddeath_none
    - report_seqtrialcox_moderna_noncoviddeath_none
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/combined/none/*.csv
        png: output/models/seqtrialcox/combined/none/*.png
        pdf: output/models/seqtrialcox/combined/none/*.pdf
        svg: output/models/seqtrialcox/combined/none/*.svg
        html: output/models/seqtrialcox/combined/none/*.html

  combine_model_vax12_type:
    run: r:latest analysis/combine_model.R vax12_type
    needs:
    - match_seqtrialcox_pfizer
    - match_seqtrialcox_moderna
    - model_seqtrialcox_pfizer_postest_vax12_type-pfizer-pfizer
    - report_seqtrialcox_pfizer_postest_vax12_type-pfizer-pfizer
    - model_seqtrialcox_pfizer_covidemergency_vax12_type-pfizer-pfizer
    - report_seqtrialcox_pfizer_covidemergency_vax12_type-pfizer-pfizer
    - model_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-pfizer-pfizer
    - report_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-pfizer-pfizer
    - model_seqtrialcox_pfizer_covidadmitted_vax12_type-pfizer-pfizer
    - report_seqtrialcox_pfizer_covidadmitted_vax12_type-pfizer-pfizer
    - model_seqtrialcox_pfizer_noncovidadmitted_vax12_type-pfizer-pfizer
    - report_seqtrialcox_pfizer_noncovidadmitted_vax12_type-pfizer-pfizer
    - model_seqtrialcox_pfizer_coviddeath_vax12_type-pfizer-pfizer
    - report_seqtrialcox_pfizer_coviddeath_vax12_type-pfizer-pfizer
    - model_seqtrialcox_pfizer_noncoviddeath_vax12_type-pfizer-pfizer
    - report_seqtrialcox_pfizer_noncoviddeath_vax12_type-pfizer-pfizer
    - model_seqtrialcox_moderna_postest_vax12_type-pfizer-pfizer
    - report_seqtrialcox_moderna_postest_vax12_type-pfizer-pfizer
    - model_seqtrialcox_moderna_covidemergency_vax12_type-pfizer-pfizer
    - report_seqtrialcox_moderna_covidemergency_vax12_type-pfizer-pfizer
    - model_seqtrialcox_moderna_covidadmittedproxy1_vax12_type-pfizer-pfizer
    - report_seqtrialcox_moderna_covidadmittedproxy1_vax12_type-pfizer-pfizer
    - model_seqtrialcox_moderna_covidadmitted_vax12_type-pfizer-pfizer
    - report_seqtrialcox_moderna_covidadmitted_vax12_type-pfizer-pfizer
    - model_seqtrialcox_moderna_noncovidadmitted_vax12_type-pfizer-pfizer
    - report_seqtrialcox_moderna_noncovidadmitted_vax12_type-pfizer-pfizer
    - model_seqtrialcox_moderna_coviddeath_vax12_type-pfizer-pfizer
    - report_seqtrialcox_moderna_coviddeath_vax12_type-pfizer-pfizer
    - model_seqtrialcox_moderna_noncoviddeath_vax12_type-pfizer-pfizer
    - report_seqtrialcox_moderna_noncoviddeath_vax12_type-pfizer-pfizer
    - model_seqtrialcox_pfizer_postest_vax12_type-az-az
    - report_seqtrialcox_pfizer_postest_vax12_type-az-az
    - model_seqtrialcox_pfizer_covidemergency_vax12_type-az-az
    - report_seqtrialcox_pfizer_covidemergency_vax12_type-az-az
    - model_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-az-az
    - report_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-az-az
    - model_seqtrialcox_pfizer_covidadmitted_vax12_type-az-az
    - report_seqtrialcox_pfizer_covidadmitted_vax12_type-az-az
    - model_seqtrialcox_pfizer_noncovidadmitted_vax12_type-az-az
    - report_seqtrialcox_pfizer_noncovidadmitted_vax12_type-az-az
    - model_seqtrialcox_pfizer_coviddeath_vax12_type-az-az
    - report_seqtrialcox_pfizer_coviddeath_vax12_type-az-az
    - model_seqtrialcox_pfizer_noncoviddeath_vax12_type-az-az
    - report_seqtrialcox_pfizer_noncoviddeath_vax12_type-az-az
    - model_seqtrialcox_moderna_postest_vax12_type-az-az
    - report_seqtrialcox_moderna_postest_vax12_type-az-az
    - model_seqtrialcox_moderna_covidemergency_vax12_type-az-az
    - report_seqtrialcox_moderna_covidemergency_vax12_type-az-az
    - model_seqtrialcox_moderna_covidadmittedproxy1_vax12_type-az-az
    - report_seqtrialcox_moderna_covidadmittedproxy1_vax12_type-az-az
    - model_seqtrialcox_moderna_covidadmitted_vax12_type-az-az
    - report_seqtrialcox_moderna_covidadmitted_vax12_type-az-az
    - model_seqtrialcox_moderna_noncovidadmitted_vax12_type-az-az
    - report_seqtrialcox_moderna_noncovidadmitted_vax12_type-az-az
    - model_seqtrialcox_moderna_coviddeath_vax12_type-az-az
    - report_seqtrialcox_moderna_coviddeath_vax12_type-az-az
    - model_seqtrialcox_moderna_noncoviddeath_vax12_type-az-az
    - report_seqtrialcox_moderna_noncoviddeath_vax12_type-az-az
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/combined/vax12_type/*.csv
        png: output/models/seqtrialcox/combined/vax12_type/*.png
        pdf: output/models/seqtrialcox/combined/vax12_type/*.pdf
        svg: output/models/seqtrialcox/combined/vax12_type/*.svg
        html: output/models/seqtrialcox/combined/vax12_type/*.html

  combine_model_cev:
    run: r:latest analysis/combine_model.R cev
    needs:
    - match_seqtrialcox_pfizer
    - match_seqtrialcox_moderna
    - model_seqtrialcox_pfizer_postest_cev-FALSE
    - report_seqtrialcox_pfizer_postest_cev-FALSE
    - model_seqtrialcox_pfizer_covidemergency_cev-FALSE
    - report_seqtrialcox_pfizer_covidemergency_cev-FALSE
    - model_seqtrialcox_pfizer_covidadmittedproxy1_cev-FALSE
    - report_seqtrialcox_pfizer_covidadmittedproxy1_cev-FALSE
    - model_seqtrialcox_pfizer_covidadmitted_cev-FALSE
    - report_seqtrialcox_pfizer_covidadmitted_cev-FALSE
    - model_seqtrialcox_pfizer_noncovidadmitted_cev-FALSE
    - report_seqtrialcox_pfizer_noncovidadmitted_cev-FALSE
    - model_seqtrialcox_pfizer_coviddeath_cev-FALSE
    - report_seqtrialcox_pfizer_coviddeath_cev-FALSE
    - model_seqtrialcox_pfizer_noncoviddeath_cev-FALSE
    - report_seqtrialcox_pfizer_noncoviddeath_cev-FALSE
    - model_seqtrialcox_moderna_postest_cev-FALSE
    - report_seqtrialcox_moderna_postest_cev-FALSE
    - model_seqtrialcox_moderna_covidemergency_cev-FALSE
    - report_seqtrialcox_moderna_covidemergency_cev-FALSE
    - model_seqtrialcox_moderna_covidadmittedproxy1_cev-FALSE
    - report_seqtrialcox_moderna_covidadmittedproxy1_cev-FALSE
    - model_seqtrialcox_moderna_covidadmitted_cev-FALSE
    - report_seqtrialcox_moderna_covidadmitted_cev-FALSE
    - model_seqtrialcox_moderna_noncovidadmitted_cev-FALSE
    - report_seqtrialcox_moderna_noncovidadmitted_cev-FALSE
    - model_seqtrialcox_moderna_coviddeath_cev-FALSE
    - report_seqtrialcox_moderna_coviddeath_cev-FALSE
    - model_seqtrialcox_moderna_noncoviddeath_cev-FALSE
    - report_seqtrialcox_moderna_noncoviddeath_cev-FALSE
    - model_seqtrialcox_pfizer_postest_cev-TRUE
    - report_seqtrialcox_pfizer_postest_cev-TRUE
    - model_seqtrialcox_pfizer_covidemergency_cev-TRUE
    - report_seqtrialcox_pfizer_covidemergency_cev-TRUE
    - model_seqtrialcox_pfizer_covidadmittedproxy1_cev-TRUE
    - report_seqtrialcox_pfizer_covidadmittedproxy1_cev-TRUE
    - model_seqtrialcox_pfizer_covidadmitted_cev-TRUE
    - report_seqtrialcox_pfizer_covidadmitted_cev-TRUE
    - model_seqtrialcox_pfizer_noncovidadmitted_cev-TRUE
    - report_seqtrialcox_pfizer_noncovidadmitted_cev-TRUE
    - model_seqtrialcox_pfizer_coviddeath_cev-TRUE
    - report_seqtrialcox_pfizer_coviddeath_cev-TRUE
    - model_seqtrialcox_pfizer_noncoviddeath_cev-TRUE
    - report_seqtrialcox_pfizer_noncoviddeath_cev-TRUE
    - model_seqtrialcox_moderna_postest_cev-TRUE
    - report_seqtrialcox_moderna_postest_cev-TRUE
    - model_seqtrialcox_moderna_covidemergency_cev-TRUE
    - report_seqtrialcox_moderna_covidemergency_cev-TRUE
    - model_seqtrialcox_moderna_covidadmittedproxy1_cev-TRUE
    - report_seqtrialcox_moderna_covidadmittedproxy1_cev-TRUE
    - model_seqtrialcox_moderna_covidadmitted_cev-TRUE
    - report_seqtrialcox_moderna_covidadmitted_cev-TRUE
    - model_seqtrialcox_moderna_noncovidadmitted_cev-TRUE
    - report_seqtrialcox_moderna_noncovidadmitted_cev-TRUE
    - model_seqtrialcox_moderna_coviddeath_cev-TRUE
    - report_seqtrialcox_moderna_coviddeath_cev-TRUE
    - model_seqtrialcox_moderna_noncoviddeath_cev-TRUE
    - report_seqtrialcox_moderna_noncoviddeath_cev-TRUE
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/combined/cev/*.csv
        png: output/models/seqtrialcox/combined/cev/*.png
        pdf: output/models/seqtrialcox/combined/cev/*.pdf
        svg: output/models/seqtrialcox/combined/cev/*.svg
        html: output/models/seqtrialcox/combined/cev/*.html

  combine_model_age65plus:
    run: r:latest analysis/combine_model.R age65plus
    needs:
    - match_seqtrialcox_pfizer
    - match_seqtrialcox_moderna
    - model_seqtrialcox_pfizer_postest_age65plus-FALSE
    - report_seqtrialcox_pfizer_postest_age65plus-FALSE
    - model_seqtrialcox_pfizer_covidemergency_age65plus-FALSE
    - report_seqtrialcox_pfizer_covidemergency_age65plus-FALSE
    - model_seqtrialcox_pfizer_covidadmittedproxy1_age65plus-FALSE
    - report_seqtrialcox_pfizer_covidadmittedproxy1_age65plus-FALSE
    - model_seqtrialcox_pfizer_covidadmitted_age65plus-FALSE
    - report_seqtrialcox_pfizer_covidadmitted_age65plus-FALSE
    - model_seqtrialcox_pfizer_noncovidadmitted_age65plus-FALSE
    - report_seqtrialcox_pfizer_noncovidadmitted_age65plus-FALSE
    - model_seqtrialcox_pfizer_coviddeath_age65plus-FALSE
    - report_seqtrialcox_pfizer_coviddeath_age65plus-FALSE
    - model_seqtrialcox_pfizer_noncoviddeath_age65plus-FALSE
    - report_seqtrialcox_pfizer_noncoviddeath_age65plus-FALSE
    - model_seqtrialcox_moderna_postest_age65plus-FALSE
    - report_seqtrialcox_moderna_postest_age65plus-FALSE
    - model_seqtrialcox_moderna_covidemergency_age65plus-FALSE
    - report_seqtrialcox_moderna_covidemergency_age65plus-FALSE
    - model_seqtrialcox_moderna_covidadmittedproxy1_age65plus-FALSE
    - report_seqtrialcox_moderna_covidadmittedproxy1_age65plus-FALSE
    - model_seqtrialcox_moderna_covidadmitted_age65plus-FALSE
    - report_seqtrialcox_moderna_covidadmitted_age65plus-FALSE
    - model_seqtrialcox_moderna_noncovidadmitted_age65plus-FALSE
    - report_seqtrialcox_moderna_noncovidadmitted_age65plus-FALSE
    - model_seqtrialcox_moderna_coviddeath_age65plus-FALSE
    - report_seqtrialcox_moderna_coviddeath_age65plus-FALSE
    - model_seqtrialcox_moderna_noncoviddeath_age65plus-FALSE
    - report_seqtrialcox_moderna_noncoviddeath_age65plus-FALSE
    - model_seqtrialcox_pfizer_postest_age65plus-TRUE
    - report_seqtrialcox_pfizer_postest_age65plus-TRUE
    - model_seqtrialcox_pfizer_covidemergency_age65plus-TRUE
    - report_seqtrialcox_pfizer_covidemergency_age65plus-TRUE
    - model_seqtrialcox_pfizer_covidadmittedproxy1_age65plus-TRUE
    - report_seqtrialcox_pfizer_covidadmittedproxy1_age65plus-TRUE
    - model_seqtrialcox_pfizer_covidadmitted_age65plus-TRUE
    - report_seqtrialcox_pfizer_covidadmitted_age65plus-TRUE
    - model_seqtrialcox_pfizer_noncovidadmitted_age65plus-TRUE
    - report_seqtrialcox_pfizer_noncovidadmitted_age65plus-TRUE
    - model_seqtrialcox_pfizer_coviddeath_age65plus-TRUE
    - report_seqtrialcox_pfizer_coviddeath_age65plus-TRUE
    - model_seqtrialcox_pfizer_noncoviddeath_age65plus-TRUE
    - report_seqtrialcox_pfizer_noncoviddeath_age65plus-TRUE
    - model_seqtrialcox_moderna_postest_age65plus-TRUE
    - report_seqtrialcox_moderna_postest_age65plus-TRUE
    - model_seqtrialcox_moderna_covidemergency_age65plus-TRUE
    - report_seqtrialcox_moderna_covidemergency_age65plus-TRUE
    - model_seqtrialcox_moderna_covidadmittedproxy1_age65plus-TRUE
    - report_seqtrialcox_moderna_covidadmittedproxy1_age65plus-TRUE
    - model_seqtrialcox_moderna_covidadmitted_age65plus-TRUE
    - report_seqtrialcox_moderna_covidadmitted_age65plus-TRUE
    - model_seqtrialcox_moderna_noncovidadmitted_age65plus-TRUE
    - report_seqtrialcox_moderna_noncovidadmitted_age65plus-TRUE
    - model_seqtrialcox_moderna_coviddeath_age65plus-TRUE
    - report_seqtrialcox_moderna_coviddeath_age65plus-TRUE
    - model_seqtrialcox_moderna_noncoviddeath_age65plus-TRUE
    - report_seqtrialcox_moderna_noncoviddeath_age65plus-TRUE
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/combined/age65plus/*.csv
        png: output/models/seqtrialcox/combined/age65plus/*.png
        pdf: output/models/seqtrialcox/combined/age65plus/*.pdf
        svg: output/models/seqtrialcox/combined/age65plus/*.svg
        html: output/models/seqtrialcox/combined/age65plus/*.html

  combine_model_prior_covid_infection:
    run: r:latest analysis/combine_model.R prior_covid_infection
    needs:
    - match_seqtrialcox_pfizer
    - match_seqtrialcox_moderna
    - model_seqtrialcox_pfizer_postest_prior_covid_infection-FALSE
    - report_seqtrialcox_pfizer_postest_prior_covid_infection-FALSE
    - model_seqtrialcox_pfizer_covidemergency_prior_covid_infection-FALSE
    - report_seqtrialcox_pfizer_covidemergency_prior_covid_infection-FALSE
    - model_seqtrialcox_pfizer_covidadmittedproxy1_prior_covid_infection-FALSE
    - report_seqtrialcox_pfizer_covidadmittedproxy1_prior_covid_infection-FALSE
    - model_seqtrialcox_pfizer_covidadmitted_prior_covid_infection-FALSE
    - report_seqtrialcox_pfizer_covidadmitted_prior_covid_infection-FALSE
    - model_seqtrialcox_pfizer_noncovidadmitted_prior_covid_infection-FALSE
    - report_seqtrialcox_pfizer_noncovidadmitted_prior_covid_infection-FALSE
    - model_seqtrialcox_pfizer_coviddeath_prior_covid_infection-FALSE
    - report_seqtrialcox_pfizer_coviddeath_prior_covid_infection-FALSE
    - model_seqtrialcox_pfizer_noncoviddeath_prior_covid_infection-FALSE
    - report_seqtrialcox_pfizer_noncoviddeath_prior_covid_infection-FALSE
    - model_seqtrialcox_moderna_postest_prior_covid_infection-FALSE
    - report_seqtrialcox_moderna_postest_prior_covid_infection-FALSE
    - model_seqtrialcox_moderna_covidemergency_prior_covid_infection-FALSE
    - report_seqtrialcox_moderna_covidemergency_prior_covid_infection-FALSE
    - model_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-FALSE
    - report_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-FALSE
    - model_seqtrialcox_moderna_covidadmitted_prior_covid_infection-FALSE
    - report_seqtrialcox_moderna_covidadmitted_prior_covid_infection-FALSE
    - model_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-FALSE
    - report_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-FALSE
    - model_seqtrialcox_moderna_coviddeath_prior_covid_infection-FALSE
    - report_seqtrialcox_moderna_coviddeath_prior_covid_infection-FALSE
    - model_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-FALSE
    - report_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-FALSE
    - model_seqtrialcox_pfizer_postest_prior_covid_infection-TRUE
    - report_seqtrialcox_pfizer_postest_prior_covid_infection-TRUE
    - model_seqtrialcox_pfizer_covidemergency_prior_covid_infection-TRUE
    - report_seqtrialcox_pfizer_covidemergency_prior_covid_infection-TRUE
    - model_seqtrialcox_pfizer_covidadmittedproxy1_prior_covid_infection-TRUE
    - report_seqtrialcox_pfizer_covidadmittedproxy1_prior_covid_infection-TRUE
    - model_seqtrialcox_pfizer_covidadmitted_prior_covid_infection-TRUE
    - report_seqtrialcox_pfizer_covidadmitted_prior_covid_infection-TRUE
    - model_seqtrialcox_pfizer_noncovidadmitted_prior_covid_infection-TRUE
    - report_seqtrialcox_pfizer_noncovidadmitted_prior_covid_infection-TRUE
    - model_seqtrialcox_pfizer_coviddeath_prior_covid_infection-TRUE
    - report_seqtrialcox_pfizer_coviddeath_prior_covid_infection-TRUE
    - model_seqtrialcox_pfizer_noncoviddeath_prior_covid_infection-TRUE
    - report_seqtrialcox_pfizer_noncoviddeath_prior_covid_infection-TRUE
    - model_seqtrialcox_moderna_postest_prior_covid_infection-TRUE
    - report_seqtrialcox_moderna_postest_prior_covid_infection-TRUE
    - model_seqtrialcox_moderna_covidemergency_prior_covid_infection-TRUE
    - report_seqtrialcox_moderna_covidemergency_prior_covid_infection-TRUE
    - model_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-TRUE
    - report_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-TRUE
    - model_seqtrialcox_moderna_covidadmitted_prior_covid_infection-TRUE
    - report_seqtrialcox_moderna_covidadmitted_prior_covid_infection-TRUE
    - model_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-TRUE
    - report_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-TRUE
    - model_seqtrialcox_moderna_coviddeath_prior_covid_infection-TRUE
    - report_seqtrialcox_moderna_coviddeath_prior_covid_infection-TRUE
    - model_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-TRUE
    - report_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-TRUE
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/combined/prior_covid_infection/*.csv
        png: output/models/seqtrialcox/combined/prior_covid_infection/*.png
        pdf: output/models/seqtrialcox/combined/prior_covid_infection/*.pdf
        svg: output/models/seqtrialcox/combined/prior_covid_infection/*.svg
        html: output/models/seqtrialcox/combined/prior_covid_infection/*.html

  ## # # # # # # # # # # # # # # # # # # # 
  ## Manuscript 
  ## # # # # # # # # # # # # # # # # # # # 

  release_objects:
    run: r:latest analysis/release_objects.R
    needs:
    - data_selection
    - combine_match
    - combine_model_none
    - combine_model_vax12_type
    - combine_model_cev
    - combine_model_age65plus
    - combine_model_prior_covid_infection
    outputs:
      moderately_sensitive:
        csv: output/release-objects/*.csv
        txt: output/files-for-release.txt
        csvsubgroup: output/release-objects/*/*.csv

State

State is inferred from the related Jobs.

Status: Succeeded

Timings

Timings set to UTC timezone.

  • Created:
  • Started:
  • Finished:
  • Runtime: 21:59:34

Config

  • Backend:
    TPP
  • Workspace:
    booster-effectiveness_main
  • Branch:
    main
  • Creator:
    wjchulme
  • Force run dependencies:
    False
  • Git Commit Hash:
    1fa79b8
  • Requested actions:
    • model_seqtrialcox_moderna_postest_cev-FALSE
    • report_seqtrialcox_moderna_postest_cev-FALSE
    • model_seqtrialcox_moderna_postest_cev-TRUE
    • report_seqtrialcox_moderna_postest_cev-TRUE
    • model_seqtrialcox_moderna_covidemergency_cev-FALSE
    • report_seqtrialcox_moderna_covidemergency_cev-FALSE
    • model_seqtrialcox_moderna_covidemergency_cev-TRUE
    • report_seqtrialcox_moderna_covidemergency_cev-TRUE
    • model_seqtrialcox_moderna_covidadmittedproxy1_cev-FALSE
    • report_seqtrialcox_moderna_covidadmittedproxy1_cev-FALSE
    • model_seqtrialcox_moderna_covidadmittedproxy1_cev-TRUE
    • report_seqtrialcox_moderna_covidadmittedproxy1_cev-TRUE
    • model_seqtrialcox_moderna_covidadmitted_cev-FALSE
    • report_seqtrialcox_moderna_covidadmitted_cev-FALSE
    • model_seqtrialcox_moderna_covidadmitted_cev-TRUE
    • report_seqtrialcox_moderna_covidadmitted_cev-TRUE
    • model_seqtrialcox_moderna_noncovidadmitted_cev-FALSE
    • report_seqtrialcox_moderna_noncovidadmitted_cev-FALSE
    • model_seqtrialcox_moderna_noncovidadmitted_cev-TRUE
    • report_seqtrialcox_moderna_noncovidadmitted_cev-TRUE
    • model_seqtrialcox_moderna_covidcc_cev-FALSE
    • report_seqtrialcox_moderna_covidcc_cev-FALSE
    • model_seqtrialcox_moderna_covidcc_cev-TRUE
    • report_seqtrialcox_moderna_covidcc_cev-TRUE
    • model_seqtrialcox_moderna_coviddeath_cev-FALSE
    • report_seqtrialcox_moderna_coviddeath_cev-FALSE
    • model_seqtrialcox_moderna_coviddeath_cev-TRUE
    • report_seqtrialcox_moderna_coviddeath_cev-TRUE
    • model_seqtrialcox_moderna_noncoviddeath_cev-FALSE
    • report_seqtrialcox_moderna_noncoviddeath_cev-FALSE
    • model_seqtrialcox_moderna_noncoviddeath_cev-TRUE
    • report_seqtrialcox_moderna_noncoviddeath_cev-TRUE
    • model_seqtrialcox_moderna_postest_prior_covid_infection-FALSE
    • report_seqtrialcox_moderna_postest_prior_covid_infection-FALSE
    • model_seqtrialcox_moderna_postest_prior_covid_infection-TRUE
    • report_seqtrialcox_moderna_postest_prior_covid_infection-TRUE
    • model_seqtrialcox_moderna_covidemergency_prior_covid_infection-FALSE
    • report_seqtrialcox_moderna_covidemergency_prior_covid_infection-FALSE
    • model_seqtrialcox_moderna_covidemergency_prior_covid_infection-TRUE
    • report_seqtrialcox_moderna_covidemergency_prior_covid_infection-TRUE
    • model_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-FALSE
    • report_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-FALSE
    • model_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-TRUE
    • report_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-TRUE
    • model_seqtrialcox_moderna_covidadmitted_prior_covid_infection-FALSE
    • report_seqtrialcox_moderna_covidadmitted_prior_covid_infection-FALSE
    • model_seqtrialcox_moderna_covidadmitted_prior_covid_infection-TRUE
    • report_seqtrialcox_moderna_covidadmitted_prior_covid_infection-TRUE
    • model_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-FALSE
    • report_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-FALSE
    • model_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-TRUE
    • report_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-TRUE
    • model_seqtrialcox_moderna_covidcc_prior_covid_infection-FALSE
    • report_seqtrialcox_moderna_covidcc_prior_covid_infection-FALSE
    • model_seqtrialcox_moderna_covidcc_prior_covid_infection-TRUE
    • report_seqtrialcox_moderna_covidcc_prior_covid_infection-TRUE
    • model_seqtrialcox_moderna_coviddeath_prior_covid_infection-FALSE
    • report_seqtrialcox_moderna_coviddeath_prior_covid_infection-FALSE
    • model_seqtrialcox_moderna_coviddeath_prior_covid_infection-TRUE
    • report_seqtrialcox_moderna_coviddeath_prior_covid_infection-TRUE
    • model_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-FALSE
    • report_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-FALSE
    • model_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-TRUE
    • report_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-TRUE