Skip to content

Job request: 19380

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
openprompt_longcovid_vaccines
ID:
fvh6t4xlqq4ib45u
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Alasdair Henderson requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_dataset_cases
    Status:
    Succeeded
    Job identifier:
    q7a4khmvlv4vi4zo
  • Action:
    generate_dataset_controls
    Status:
    Succeeded
    Job identifier:
    43tyjgrd2s2etea5
  • Action:
    generate_dataset_lc_pre_vacc
    Status:
    Succeeded
    Job identifier:
    pgz2gppwt4sovkwg
  • Action:
    clean_lc_pre_vacc_data
    Status:
    Succeeded
    Job identifier:
    zrd3tdm7224eyfh2
  • Action:
    clean_the_data
    Status:
    Succeeded
    Job identifier:
    ky6si77deqbo4y2z
  • Action:
    calculate_daily_dynamics
    Status:
    Succeeded
    Job identifier:
    yzqibdqa3pphrzcj
  • Action:
    calculate_monthly_dynamics
    Status:
    Succeeded
    Job identifier:
    mp2cseb7m42dmei4
  • Action:
    longcovid_by_snomedcode
    Status:
    Succeeded
    Job identifier:
    j464jbtgwugkaibj
  • Action:
    plot_longcovid_flows
    Status:
    Succeeded
    Job identifier:
    vtez6bn32f56wnvj
  • Action:
    plot_vaccine_after_longcovid
    Status:
    Succeeded
    Job identifier:
    s7yciu6p3yz5trr6
  • Action:
    summarise_cohort_at_baseline
    Status:
    Succeeded
    Job identifier:
    klzk7jar6fy3xfwv
  • Action:
    time_update_data
    Status:
    Succeeded
    Job identifier:
    ffq5o76xoe6svfgp
  • Action:
    time_update_sensAnalysis
    Status:
    Succeeded
    Job identifier:
    v7b5qryqm27eoeta
  • Action:
    plot_monthly_dynamics
    Status:
    Succeeded
    Job identifier:
    7hatzf4ep5u6biit
  • Action:
    plot_daily_dynamics
    Status:
    Succeeded
    Job identifier:
    umjczqzfltlh26fe
  • Action:
    crude_rates_timeupdated
    Status:
    Succeeded
    Job identifier:
    sbbg5somxco4xawt
  • Action:
    output_crude_rates
    Status:
    Succeeded
    Job identifier:
    pest5xfy4pdbu7fu
  • Action:
    plot_incidence
    Status:
    Succeeded
    Job identifier:
    mgwv5tbsqrgwptw4
  • Action:
    poisson_checks
    Status:
    Succeeded
    Job identifier:
    x6sls73gtitqt2ef
  • Action:
    poisson_rates_timeupdated
    Status:
    Succeeded
    Job identifier:
    tb7w7tu4mkvdwxra
  • Action:
    summarise_timedata
    Status:
    Succeeded
    Job identifier:
    pjwcyipzwn3w6xbx
  • Action:
    poisson_plots
    Status:
    Succeeded
    Job identifier:
    pebs647ipu3kcqo7
  • Action:
    poisson_rates_timeupdated_sensAnalysis
    Status:
    Succeeded
    Job identifier:
    l5mva2arvclvmdkr
  • Action:
    poisson_plots_sensAnalysis
    Status:
    Succeeded
    Job identifier:
    7ac4fki2qjyzsfdq

Pipeline

Show project.yaml
This file is too large to render, try viewing it on GitHub .

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 26:35:11

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Succeeded
Backend
TPP
Workspace
openprompt_longcovid_vaccines
Requested by
Alasdair Henderson
Branch
main
Force run dependencies
Yes
Git commit hash
3797d82
Requested actions
  • run_all

Code comparison

Compare the code used in this job request