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Job request: 23672

Organisation:
Bennett Institute
Workspace:
covid-vaccine-history
ID:
albuts4ynlrmd62f
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Will Hulme requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    extract_fixed
    Status:
    Status: Succeeded
    Job identifier:
    ifisgq3ozpgbgnpq
  • Action:
    extract_varying
    Status:
    Status: Succeeded
    Job identifier:
    w7igyoifkwc2mmsl
  • Action:
    process
    Status:
    Status: Succeeded
    Job identifier:
    cllt6qov6pl5lc2m
  • Action:
    report_history
    Status:
    Status: Succeeded
    Job identifier:
    5q6lu5y4xae4orpz

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 10000

actions:

  extract_fixed:
    run: ehrql:v1 generate-dataset analysis/dataset_definition_fixed.py
      --output output/extracts/extract_fixed.arrow
      --dummy-data-file lib/dummydata/dummyinput_fixed.arrow
    outputs:
      highly_sensitive:
        cohort: output/extracts/extract_fixed.arrow

  extract_varying:
    run: ehrql:v1 generate-dataset analysis/dataset_definition_varying.py
      --output output/extracts/extract_varying.arrow
      --dummy-data-file lib/dummydata/dummyinput_varying.arrow
    outputs:
      highly_sensitive:
        cohort: output/extracts/extract_varying.arrow

  process:
    run: r:latest analysis/process.R
    needs: [extract_fixed, extract_varying]
    outputs:
      highly_sensitive:
        rds: output/process/*.rds

  report_history:
    run: r:latest analysis/report_history.R
    needs: [process]
    outputs:
      moderately_sensitive:
        csv: output/report_history/*.csv
        png: output/report_history/*.png

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 04:22:29

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Succeeded
Backend
TPP
Workspace
covid-vaccine-history
Requested by
Will Hulme
Branch
main
Force run dependencies
No
Git commit hash
49bc715
Requested actions
  • extract_fixed
  • extract_varying
  • process
  • report_history

Code comparison

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