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Job request: 25928

Organisation:
Bennett Institute
Workspace:
vaccines-data-quality
ID:
rkjtjl6miilj5mfs
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Martina Pesce requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    design_elements_flu
    Status:
    Succeeded
    Job identifier:
    s64gx6y7ta4lgimt
  • Action:
    extract_flu
    Status:
    Succeeded
    Job identifier:
    nod4pgp5ufkm7xjz
  • Action:
    report_data_quality_flu
    Status:
    Succeeded
    Job identifier:
    qby5n7qxyanlhcwq

Pipeline

Show project.yaml 
version: '5.0'

actions:
#########################
#  Flu vax data quality #
#########################
  design_elements_flu:
    run: r:v2 analysis/flu/0_flu_design.R
    needs: []
    outputs:
      moderately_sensitive:
        json: output/outputs_flu/design_elements/*.json
  
  extract_flu:
    run: ehrql:v1 generate-dataset analysis/flu/1_flu_dataset_definition.py
      --output output/outputs_flu/extract_flu:arrow
      #--dummy-data-file analysis/1-extract/dummy-data/dummy_varying.arrow
    needs: [design_elements_flu]
    outputs:
      highly_sensitive:
        cohort: output/outputs_flu/extract_flu/*.arrow

  report_data_quality_flu:
    run: r:v2 analysis/flu/2_flu_data_quality.R
    needs: [extract_flu]
    outputs:
      moderately_sensitive:
        csv: output/outputs_flu/flu_data_quality/*.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 35:29:17

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Succeeded
Backend
TPP
Workspace
vaccines-data-quality
Requested by
Martina Pesce
Branch
main
Force run dependencies
Yes
Git commit hash
d320590
Requested actions
  • design_elements_flu
  • extract_flu
  • report_data_quality_flu
  • run_all

Code comparison

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