Skip to content

Job request: 6635

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
sotrovimab_and_molnupiravir
ID:
neeztyli2o77rob2
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Bang Zheng requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 100000

actions:

  generate_study_population:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.csv

  data_preparation:
    run: stata-mp:latest analysis/data_preparation_and_descriptives.do
    needs: [generate_study_population]
    outputs:
      moderately_sensitive:
        log: logs/data_preparation.log
      highly_sensitive:
        data: output/main.dta

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:00:14

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Failed
Backend
TPP
Workspace
sotrovimab_and_molnupiravir
Requested by
Bang Zheng
Branch
main
Force run dependencies
No
Git commit hash
24fa6a1
Requested actions
  • data_preparation

Code comparison

Compare the code used in this Job Request