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Job request: 6635

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
sotrovimab_and_molnupiravir
ID:
neeztyli2o77rob2
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Bang Zheng requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    data_preparation
    Status:
    Status: Failed
    Job identifier:
    63kr4zyy2jzhoq5e
    Error:
    nonzero_exit: Job exited with error code 1

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 100000

actions:

  generate_study_population:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.csv

  data_preparation:
    run: stata-mp:latest analysis/data_preparation_and_descriptives.do
    needs: [generate_study_population]
    outputs:
      moderately_sensitive:
        log: logs/data_preparation.log
      highly_sensitive:
        data: output/main.dta

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:00:14

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
sotrovimab_and_molnupiravir
Requested by
Bang Zheng
Branch
main
Force run dependencies
No
Git commit hash
24fa6a1
Requested actions
  • data_preparation

Code comparison

Compare the code used in this job request