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Job request: 1041

Organisation:
Bennett Institute
Workspace:
reinfection
ID:
q466p2xhsy5eez42
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Alex Walker requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 1000

actions:

  generate_study_population:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.csv

  subsequent_positive_tests:
    run: python:latest python analysis/subsequent_positive_tests.py
    needs: [generate_study_population]
    outputs:
      moderately_sensitive:
        graph1: output/repeated_positive_date.svg
        graph2: output/interval_between_positives.svg

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:00:09

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Succeeded
Backend
TPP
Workspace
reinfection
Requested by
Alex Walker
Branch
master
Force run dependencies
No
Git commit hash
5243c94
Requested actions
  • subsequent_positive_tests

Code comparison

Compare the code used in this Job Request