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Job request: 14319

Organisation:
Bennett Institute
Workspace:
winter-pressures
ID:
yy7gmkgz3ewaie3t
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Iain Dillingham requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 5000

actions:

  generate_dataset:
    run: >
      databuilder:v0
        generate-dataset
        analysis/dataset_definition.py
        --output output/dataset_wide.arrow
    outputs:
      highly_sensitive:
        dataset: output/dataset_wide.arrow

  get_freq_na_values:
    run: >
      python:latest
        python
        -m analysis.get_freq_na_values
    needs: [generate_dataset]
    outputs:
      moderately_sensitive:
        dataset: output/freq_na_values.csv

  reshape_dataset:
    run: >
      python:latest
        python
        -m analysis.reshape_dataset
    needs: [generate_dataset]
    outputs:
      highly_sensitive:
        dataset: output/dataset_long.arrow

  generate_measure:
    run: >
      python:latest
        python
        -m analysis.generate_measure
    needs: [reshape_dataset]
    outputs:
      moderately_sensitive:
        measure: output/measure_median_lead_time_in_days_by_nunique_patient_id.csv

  generate_deciles_charts:
    run: >
      deciles-charts:v0.0.33
        --input-files output/measure_*.csv 
        --output-dir output
    config:
      show_outer_percentiles: true
    needs: [generate_measure]
    outputs:
      moderately_sensitive:
        deciles_charts: output/deciles_chart_*.png
        deciles_tables: output/deciles_table_*.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 02:47:16

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Succeeded
Backend
TPP
Workspace
winter-pressures
Requested by
Iain Dillingham
Branch
main
Force run dependencies
Yes
Git commit hash
be2aac2
Requested actions
  • run_all

Code comparison

Compare the code used in this job request