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Job request: 14603

Organisation:
Bennett Institute
Workspace:
winter-pressures
ID:
wgsxgfnvhnzgaajj
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Iain Dillingham requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

  • Action:
    generate_dataset
    Status:
    Status: Failed
    Job identifier:
    yo5mzxmij77spbrc
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    generate_measure
    Status:
    Status: Failed
    Job identifier:
    vox2ktp3n5v5wxxt
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    get_freq_na_values
    Status:
    Status: Failed
    Job identifier:
    pxlhtlrge3kb7vvk
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    reshape_dataset
    Status:
    Status: Failed
    Job identifier:
    4q2weklxglrt2zku
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    generate_deciles_charts
    Status:
    Status: Failed
    Job identifier:
    nfcmioqjfcrnclvh
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 5000

actions:

  generate_dataset:
    run: >
      databuilder:v0
        generate-dataset
        analysis/dataset_definition.py
        --output output/dataset_wide.arrow
    outputs:
      highly_sensitive:
        dataset: output/dataset_wide.arrow

  get_freq_na_values:
    run: >
      python:latest
        python
        -m analysis.get_freq_na_values
    needs: [generate_dataset]
    outputs:
      moderately_sensitive:
        dataset: output/freq_na_values.csv

  reshape_dataset:
    run: >
      python:latest
        python
        -m analysis.reshape_dataset
    needs: [generate_dataset]
    outputs:
      highly_sensitive:
        dataset: output/dataset_long.arrow

  generate_measure:
    run: >
      python:latest
        python
        -m analysis.generate_measure
    needs: [reshape_dataset]
    outputs:
      moderately_sensitive:
        measure: output/measure_median_lead_time_in_days_by_nunique_patient_id.csv

  generate_deciles_charts:
    run: >
      deciles-charts:v0.0.33
        --input-files output/measure_*.csv 
        --output-dir output
    config:
      show_outer_percentiles: true
    needs: [generate_measure]
    outputs:
      moderately_sensitive:
        deciles_charts: output/deciles_chart_*.png
        deciles_tables: output/deciles_table_*.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 49:11:30

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Failed
Backend
TPP
Workspace
winter-pressures
Requested by
Iain Dillingham
Branch
main
Force run dependencies
Yes
Git commit hash
2d82014
Requested actions
  • run_all

Code comparison

Compare the code used in this Job Request