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Job request: 14067

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
healthcare_needs_chronic_kidney_disease
ID:
2s6zghnhmzrgjiu2
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Viyaasan Mahalingasivam requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

  • Action:
    2017
    Status:
    Status: Succeeded
    Job identifier:
    gb5zdpryk2eogx6c
  • Action:
    2017_ckd
    Status:
    Status: Succeeded
    Job identifier:
    q7tkgswvx2sbgxs3
  • Action:
    2017_ckd_complete
    Status:
    Status: Succeeded
    Job identifier:
    jdxujteqsklfy5nj
  • Action:
    2017_clean_ckd_complete
    Status:
    Status: Succeeded
    Job identifier:
    tqedyqo2coamtwg7
  • Action:
    2017_outcomes
    Status:
    Status: Succeeded
    Job identifier:
    35wpjv4i4vlni5ou

Pipeline

Show project.yaml 
version: "3.0"

expectations:
  population_size: 50000

actions:

  2017:
    run: cohortextractor:latest generate_cohort --study-definition study_definition_2017
    outputs:
      highly_sensitive:
        cohort: output/input_2017.csv

  2017_ckd:
    run: stata-mp:latest analysis/2017_ckd.do
    needs: [2017]
    outputs:
      highly_sensitive:
        analysis_dataset: output/2017_ckd.csv
      moderately_sensitive:
        log: logs/2017_ckd.log
  
  2017_ckd_complete:
    run: cohortextractor:latest generate_cohort --study-definition study_definition_2017_ckd_complete
    needs: [2017, 2017_ckd]
    outputs:
      highly_sensitive:
        cohort: output/input_2017_ckd_complete.csv

  2017_clean_ckd_complete:
    run: stata-mp:latest analysis/2017_ckd_complete.do
    needs: [2017, 2017_ckd, 2017_ckd_complete]
    outputs:
      highly_sensitive:
        analysis_dataset: output/2017_ckd_complete.dta
      moderately_sensitive:
        log: logs/2017_ckd_complete.log

  2017_outcomes:
    run: stata-mp:latest analysis/2017_outcomes.do
    needs: [2017, 2017_ckd, 2017_ckd_complete, 2017_clean_ckd_complete]
    outputs:
      moderately_sensitive:
        log: logs/2017_outcomes.log

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 01:10:00

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Succeeded
Backend
TPP
Workspace
healthcare_needs_chronic_kidney_disease
Requested by
Viyaasan Mahalingasivam
Branch
main
Force run dependencies
No
Git commit hash
575959f
Requested actions
  • run_all

Code comparison

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