Job request: 15679
- Organisation:
- The London School of Hygiene & Tropical Medicine
- Workspace:
- healthcare_needs_chronic_kidney_disease
- ID:
- 24k5wh6ngysvk4rt
This page shows the technical details of what happened when the authorised researcher Viyaasan Mahalingasivam requested one or more actions to be run against real patient data in the project, within a secure environment.
By cross-referencing the list of jobs with the
pipeline section below, you can infer what
security level
various outputs were written to. Researchers can never directly
view outputs marked as
highly_sensitive
;
they can only request that code runs against them. Outputs
marked as
moderately_sensitive
can be viewed by an approved researcher by logging into a highly
secure environment. Only outputs marked as
moderately_sensitive
can be requested for release to the public, via a controlled
output review service.
Jobs
-
- Job identifier:
-
uqzkmo5ls7up2ivz
-
- Job identifier:
-
yrh2olfw254yi7vx
-
- Job identifier:
-
wduiea7kuuks6uxv
-
- Job identifier:
-
3aom7jc7vpiqpvaj
-
- Job identifier:
-
r4aleydvreabgnd4
-
- Job identifier:
-
tp6cm7ee4e67emxl
Pipeline
Show project.yaml
version: "3.0"
expectations:
population_size: 50000
actions:
2017:
run: cohortextractor:latest generate_cohort --study-definition study_definition_2017
outputs:
highly_sensitive:
cohort: output/input_2017.csv
2017_ckd:
run: stata-mp:latest analysis/ckd.do 2017
needs: [2017]
outputs:
highly_sensitive:
analysis_dataset: output/2017_ckd.csv
moderately_sensitive:
log: logs/2017_ckd.log
2017_ckd_complete:
run: cohortextractor:latest generate_cohort --study-definition study_definition_2017_ckd_complete
needs: [2017, 2017_ckd]
outputs:
highly_sensitive:
cohort: output/input_2017_ckd_complete.csv
2017_clean_ckd_complete:
run: stata-mp:latest analysis/ckd_complete.do 2017
needs: [2017, 2017_ckd, 2017_ckd_complete]
outputs:
highly_sensitive:
analysis_dataset: output/2017_ckd_complete.dta
moderately_sensitive:
log: logs/2017_ckd_complete.log
2017_healthcare_use:
run: stata-mp:latest analysis/healthcare_use.do 2017
needs: [2017, 2017_ckd, 2017_ckd_complete, 2017_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/2017_healthcare_use.log
output: output/2017_healthcare_use.csv
2017_healthcare_use_region:
run: stata-mp:latest analysis/healthcare_use_region.do 2017
needs: [2017, 2017_ckd, 2017_ckd_complete, 2017_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/2017_healthcare_use_region.log
output: output/2017_healthcare_use_region.csv
2018:
run: cohortextractor:latest generate_cohort --study-definition study_definition_2018
outputs:
highly_sensitive:
cohort: output/input_2018.csv
2018_ckd:
run: stata-mp:latest analysis/ckd.do 2018
needs: [2018]
outputs:
highly_sensitive:
analysis_dataset: output/2018_ckd.csv
moderately_sensitive:
log: logs/2018_ckd.log
2018_ckd_complete:
run: cohortextractor:latest generate_cohort --study-definition study_definition_2018_ckd_complete
needs: [2018, 2018_ckd]
outputs:
highly_sensitive:
cohort: output/input_2018_ckd_complete.csv
2018_clean_ckd_complete:
run: stata-mp:latest analysis/ckd_complete.do 2018
needs: [2018, 2018_ckd, 2018_ckd_complete]
outputs:
highly_sensitive:
analysis_dataset: output/2018_ckd_complete.dta
moderately_sensitive:
log: logs/2018_ckd_complete.log
2018_healthcare_use:
run: stata-mp:latest analysis/healthcare_use.do 2018
needs: [2018, 2018_ckd, 2018_ckd_complete, 2018_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/2018_healthcare_use.log
output: output/2018_healthcare_use.csv
2018_healthcare_use_region:
run: stata-mp:latest analysis/healthcare_use_region.do 2018
needs: [2018, 2018_ckd, 2018_ckd_complete, 2018_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/2018_healthcare_use_region.log
output: output/2018_healthcare_use_region.csv
2019:
run: cohortextractor:latest generate_cohort --study-definition study_definition_2019
outputs:
highly_sensitive:
cohort: output/input_2019.csv
2019_ckd:
run: stata-mp:latest analysis/ckd.do 2019
needs: [2019]
outputs:
highly_sensitive:
analysis_dataset: output/2019_ckd.csv
moderately_sensitive:
log: logs/2019_ckd.log
2019_ckd_complete:
run: cohortextractor:latest generate_cohort --study-definition study_definition_2019_ckd_complete
needs: [2019, 2019_ckd]
outputs:
highly_sensitive:
cohort: output/input_2019_ckd_complete.csv
2019_clean_ckd_complete:
run: stata-mp:latest analysis/ckd_complete.do 2019
needs: [2019, 2019_ckd, 2019_ckd_complete]
outputs:
highly_sensitive:
analysis_dataset: output/2019_ckd_complete.dta
moderately_sensitive:
log: logs/2019_ckd_complete.log
2019_healthcare_use:
run: stata-mp:latest analysis/healthcare_use.do 2019
needs: [2019, 2019_ckd, 2019_ckd_complete, 2019_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/2019_healthcare_use.log
output: output/2019_healthcare_use.csv
2019_healthcare_use_region:
run: stata-mp:latest analysis/healthcare_use_region.do 2019
needs: [2019, 2019_ckd, 2019_ckd_complete, 2019_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/2019_healthcare_use_region.log
output: output/2019_healthcare_use_region.csv
2020:
run: cohortextractor:latest generate_cohort --study-definition study_definition_2020
outputs:
highly_sensitive:
cohort: output/input_2020.csv
2020_ckd:
run: stata-mp:latest analysis/ckd.do 2020
needs: [2020]
outputs:
highly_sensitive:
analysis_dataset: output/2020_ckd.csv
moderately_sensitive:
log: logs/2020_ckd.log
2020_ckd_complete:
run: cohortextractor:latest generate_cohort --study-definition study_definition_2020_ckd_complete
needs: [2020, 2020_ckd]
outputs:
highly_sensitive:
cohort: output/input_2020_ckd_complete.csv
2020_clean_ckd_complete:
run: stata-mp:latest analysis/ckd_complete.do 2020
needs: [2020, 2020_ckd, 2020_ckd_complete]
outputs:
highly_sensitive:
analysis_dataset: output/2020_ckd_complete.dta
moderately_sensitive:
log: logs/2020_ckd_complete.log
2020_healthcare_use:
run: stata-mp:latest analysis/healthcare_use.do 2020
needs: [2020, 2020_ckd, 2020_ckd_complete, 2020_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/2020_healthcare_use.log
output: output/2020_healthcare_use.csv
2020_healthcare_use_region:
run: stata-mp:latest analysis/healthcare_use_region.do 2020
needs: [2020, 2020_ckd, 2020_ckd_complete, 2020_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/2020_healthcare_use_region.log
output: output/2020_healthcare_use_region.csv
2021:
run: cohortextractor:latest generate_cohort --study-definition study_definition_2021
outputs:
highly_sensitive:
cohort: output/input_2021.csv
2021_ckd:
run: stata-mp:latest analysis/ckd.do 2021
needs: [2021]
outputs:
highly_sensitive:
analysis_dataset: output/2021_ckd.csv
moderately_sensitive:
log: logs/2021_ckd.log
2021_ckd_complete:
run: cohortextractor:latest generate_cohort --study-definition study_definition_2021_ckd_complete
needs: [2021, 2021_ckd]
outputs:
highly_sensitive:
cohort: output/input_2021_ckd_complete.csv
2021_clean_ckd_complete:
run: stata-mp:latest analysis/ckd_complete.do 2021
needs: [2021, 2021_ckd, 2021_ckd_complete]
outputs:
highly_sensitive:
analysis_dataset: output/2021_ckd_complete.dta
moderately_sensitive:
log: logs/2021_ckd_complete.log
2021_healthcare_use:
run: stata-mp:latest analysis/healthcare_use.do 2021
needs: [2021, 2021_ckd, 2021_ckd_complete, 2021_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/2021_healthcare_use.log
output: output/2021_healthcare_use.csv
2021_healthcare_use_region:
run: stata-mp:latest analysis/healthcare_use_region.do 2021
needs: [2021, 2021_ckd, 2021_ckd_complete, 2021_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/2021_healthcare_use_region.log
output: output/2021_healthcare_use_region.csv
2022:
run: cohortextractor:latest generate_cohort --study-definition study_definition_2022
outputs:
highly_sensitive:
cohort: output/input_2022.csv
2022_ckd:
run: stata-mp:latest analysis/ckd.do 2022
needs: [2022]
outputs:
highly_sensitive:
analysis_dataset: output/2022_ckd.csv
moderately_sensitive:
log: logs/2022_ckd.log
2022_ckd_complete:
run: cohortextractor:latest generate_cohort --study-definition study_definition_2022_ckd_complete
needs: [2022, 2022_ckd]
outputs:
highly_sensitive:
cohort: output/input_2022_ckd_complete.csv
2022_clean_ckd_complete:
run: stata-mp:latest analysis/ckd_complete.do 2022
needs: [2022, 2022_ckd, 2022_ckd_complete]
outputs:
highly_sensitive:
analysis_dataset: output/2022_ckd_complete.dta
moderately_sensitive:
log: logs/2022_ckd_complete.log
2022_healthcare_use:
run: stata-mp:latest analysis/healthcare_use.do 2022
needs: [2022, 2022_ckd, 2022_ckd_complete, 2022_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/2022_healthcare_use.log
output: output/2022_healthcare_use.csv
2022_healthcare_use_region:
run: stata-mp:latest analysis/healthcare_use_region.do 2022
needs: [2022, 2022_ckd, 2022_ckd_complete, 2022_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/2022_healthcare_use_region.log
output: output/2022_healthcare_use_region.csv
ckd_progression:
run: stata-mp:latest analysis/ckd_progression.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete, 2017_healthcare_use, 2018_healthcare_use, 2019_healthcare_use, 2020_healthcare_use, 2021_healthcare_use, 2022_healthcare_use]
outputs:
moderately_sensitive:
log: logs/ckd_progression.log
output: output/ckd_progression.csv
Timeline
-
Created:
-
Started:
-
Finished:
-
Runtime: 04:46:12
These timestamps are generated and stored using the UTC timezone on the TPP backend.
Job information
- Status
-
Succeeded
- Backend
- TPP
- Workspace
- healthcare_needs_chronic_kidney_disease
- Requested by
- Viyaasan Mahalingasivam
- Branch
- main
- Force run dependencies
- No
- Git commit hash
- 025cf07
- Requested actions
-
-
2017_healthcare_use_region
-
2018_healthcare_use_region
-
2019_healthcare_use_region
-
2020_healthcare_use_region
-
2021_healthcare_use_region
-
2022_healthcare_use_region
-
Code comparison
Compare the code used in this Job Request